Performs UMAP for visualization of multi-omics data.
Usage
compute_umap(data, n_neighbors = 15, min_dist = 0.1, n_epochs = 200, seed = 42)
Arguments
- data
Data matrix (samples x features) or list of matrices.
- n_neighbors
Number of neighbors (default: 15).
- min_dist
Minimum distance (default: 0.1).
- n_epochs
Number of epochs (default: 200).
- seed
Random seed.
Value
Matrix with UMAP coordinates (samples x 2).