Performs SNF-based clustering on multi-omics data.
Usage
run_snf(data, n_clusters, n_neighbors = 20, sigma = 0.5, n_iterations = 20)
Arguments
- data
List of matrices (features x samples).
- n_clusters
Number of clusters.
- n_neighbors
Number of neighbors for affinity matrix (default: 20).
- sigma
Variance for local model (default: 0.5).
- n_iterations
Number of SNF iterations (default: 20).
Value
Data frame with sample IDs, cluster assignments, and cluster labels.