Package index • ggforge

Basic Statistical Plots

Functions for creating basic statistical visualizations

ScatterPlot(): Scatter Plot
LinePlot(): Line Plot
BarPlot(): Bar Plot
BoxPlot(): Box Plot
ViolinPlot(): Violin Plot
DensityPlot(): Density Plot
JitterPlot(): Jitter Plot
AreaPlot(): Area Plot
Histogram(): Histogram
QQPlot(): QQ Plot
TrendPlot(): Trend Plot
RidgePlot(): Ridge Plot
DotPlot(): Dot Plot / Scatter Plot
LollipopPlot(): Lollipop Plot
SplitBarPlot() WaterfallPlot(): Split Bar Plot (Waterfall Plot)

Enrichment & Pathway Analysis

Functions for visualizing enrichment and pathway analysis results

EnrichMap(): Enrichment Map
EnrichNetwork(): Enrichment Network
GSEASummaryPlot(): GSEA Summary Plot
GSEAPlot(): GSEA Plot

Single-Cell & Spatial Analysis

Functions for single-cell and spatial transcriptomics

DimPlot(): Dimension Reduction Plot
FeatureDimPlot(): Feature Dimension Reduction Plot
VelocityPlot(): Cell Velocity Plot
SpatImagePlot() SpatMasksPlot() SpatShapesPlot() SpatPointsPlot(): Spatial Plotting Functions for ggforge

Genomics

Functions for genomics data visualization

VolcanoPlot(): Volcano Plot
ManhattanPlot(): Manhattan Plot
VennDiagram(): Venn Diagram
UpsetPlot(): Upset Plot

Survival & Clinical

Functions for survival and clinical data analysis

KMPlot(): Kaplan-Meier Survival Plot
CoxPlot(): Cox Proportional-Hazards Model Visualization
ROCCurve(): ROC Curve Plot

Networks & Relationships

Functions for network and relationship visualization

CorPlot(): Correlation Plot
ChordPlot() CircosPlot(): Chord / Circos Plot
SankeyPlot() AlluvialPlot(): Sankey / Alluvial Plot
Network(): Network Plot

Specialized Plots

Specialized visualization functions

Heatmap(): Heatmap
RadarPlot() SpiderPlot(): Radar Plot / Spider Plot
PieChart(): Pie Chart
RingPlot(): Ring Plot
WordCloudPlot(): Word Cloud Plot
RarefactionPlot(): Rarefaction Plot
ClustreePlot(): Clustree Plot
ChordPlot() CircosPlot(): Chord / Circos Plot
SplitBarPlot() WaterfallPlot(): Split Bar Plot (Waterfall Plot)

Themes & Palettes

Theme and color palette functions

themes: ggforge Theming System
theme_ggforge(): Main ggforge Theme
theme_ggforge_grid(): ggforge Theme for Grid-based Plots (Heatmap-like)
theme_minimal_axes(): Minimal Theme
palettes: Color Palette System for ggforge
get_palette(): Get colors from palette
show_palettes(): Show available palettes

Example Data

Example datasets for demonstration

dim_example: Example Dimensionality Reduction Data
enrich_example: Example Enrichment Analysis Data
enrich_multidb_example: Example Multi-Database Enrichment Data
gsea_example: Example GSEA Results
palette_list: Color Palette Collection
words_excluded: Excluded Words for Text Analysis

Utilities

Utility functions

ggforge_gallery(): ggforge Plot Gallery
var_type(): Annotate variable with explicit type