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hdWGCNA
0.5.00
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Tutorials
━━━━━━━━━━ Getting Started ━━━━━━━━━━
Introduction to hdWGCNA
Quick Start Guide
Algorithm and Mathematical Framework
━━━━━━━━━━ Core Tutorials ━━━━━━━━━━
hdWGCNA in single-cell data
hdWGCNA in spatial transcriptomics data
Isoform co-expression network analysis
Network visualization
━━━━━━━━━━ Biological Context ━━━━━━━━━━
Differential module eigengene (DME) analysis
Module trait correlation
Enrichment analysis
━━━━━━━━━━ Cross-Dataset Analysis ━━━━━━━━━━
Projecting modules to new datasets
Module preservation and reproducibility
Cross-species and cross-modality analysis
━━━━━━━━━━ Advanced Topics ━━━━━━━━━━
Transcription factor network analysis
PPI network integration
Consensus network analysis
Pseudobulk analysis
Pseudotime dynamics
Motif analysis
━━━━━━━━━━ Other ━━━━━━━━━━
Module customization
Alternative metacell algorithms
Using SCTransform data
All vignettes
Reference
News
GetActiveWGCNA
Source:
R/getters_and_setters.R
GetActiveWGCNA.Rd
GetActiveWGCNA
Usage
GetActiveWGCNA
(
seurat_obj
)
Arguments
seurat_obj
A Seurat object
