Visualize pseudotime on embedding.
Usage
plot_pseudotime(
seurat_obj,
time_key = "pseudotime",
embedding_key = "umap",
pt_size = 1,
pt_alpha = 0.8,
colors = NULL
)
Arguments
- seurat_obj
Seurat object
- time_key
Key in metadata for pseudotime (default: "pseudotime")
- embedding_key
Embedding to use (default: "umap")
- pt_size
Point size (default: 1)
- pt_alpha
Point alpha (default: 0.8)
- colors
Color palette (default: viridis)