Predict latent representations for query cells.
Usage
predict_latentsp(
trainer,
query_seurat,
mode = "fine",
alpha_z = 0.5,
alpha_predz = 0.5,
step_size = NULL,
step_wise = FALSE,
batch_size = NULL,
assay = "RNA"
)Arguments
- trainer
Trained Trainer object
- query_seurat
Query Seurat object
- mode
Prediction mode: "fine" or "coarse" (default: "fine")
- alpha_z
Weight for encoder-derived latent (default: 0.5)
- alpha_predz
Weight for ODE-derived latent (default: 0.5)
- step_size
Step size for integration (default: NULL)
- step_wise
Use step-wise integration (default: FALSE)
- batch_size
Batch size (default: NULL)
- assay
Assay name (default: "RNA")