Predict latent space for query (unobserved) time intervals. Matches scTour's predict_ltsp_from_time function exactly.
Usage
predict_ltsp_from_time(
trainer,
t,
reverse = FALSE,
step_wise = TRUE,
step_size = NULL,
alpha_z = 0.5,
alpha_predz = 0.5,
k = 20,
assay = "RNA"
)Arguments
- trainer
Trained Trainer object
- t
Vector of query time points (values between 0 and 1)
- reverse
Whether pseudotime was reversed (default: FALSE)
- step_wise
Use step-wise integration (default: TRUE)
- step_size
Step size for integration (default: NULL)
- alpha_z
Weight for encoder-derived latent (default: 0.5)
- alpha_predz
Weight for ODE-derived latent (default: 0.5)
- k
Number of nearest neighbors in time space (default: 20)
- assay
Assay name (default: "RNA")