Build a CCC reference panel from atlas data
Usage
build_reference(
seurat_obj,
reference_name,
database,
celltype_col,
save_path = ".",
min_percentile = 0.1,
min_genes_per_cell = 50L,
debug_mode = FALSE
)Arguments
- seurat_obj
Seurat object with reference data
- reference_name
Name for the reference
- database
Database name or path
- celltype_col
Column name for cell type
- save_path
Path to save reference
- min_percentile
Minimum expression percentage
- min_genes_per_cell
Minimum genes per cell for QC
- debug_mode
Whether to save debug files