Run FastCCC analysis with multiple methods and Cauchy combination
Usage
fastccc_cauchy(
seurat_obj,
database,
celltype_col,
single_unit_summary_list = c("Mean", "Median", "Q3", "Quantile_0.9"),
complex_aggregation_list = c("Minimum", "Average"),
LR_combination_list = c("Arithmetic", "Geometric"),
min_percentile = 0.1,
save_path = NULL,
use_DEG = FALSE,
parallel = FALSE,
n_cores = NULL
)Arguments
- seurat_obj
Seurat object
- database
Database name or path
- celltype_col
Column name for cell type labels
- single_unit_summary_list
Methods for single-unit summary
- complex_aggregation_list
Methods for complex aggregation
- LR_combination_list
Methods for L-R combination
- min_percentile
Minimum expression percentage threshold
- save_path
Path to save results (NULL for current directory)
- use_DEG
Whether to filter by DEG
- parallel
Whether to use parallel computation
- n_cores
Number of cores for parallel