Extract and preprocess data from Seurat object for CCC analysis
Usage
get_input_data(
seurat_obj,
database,
celltype_col,
convert_type = "hgnc_symbol",
filter_genes = FALSE,
min_cells = 1L
)
Arguments
- seurat_obj
Seurat object
- database
Database name or path
- celltype_col
Column name for cell type labels
- convert_type
Gene name type ("hgnc_symbol")
- filter_genes
Whether to filter low-expressed genes
- min_cells
Minimum cells expressing a gene
Value
List containing counts_dt, labels_dt, complex_table, interactions
