Run FastCCC with a single statistical method
Usage
statistical_analysis_method(
seurat_obj,
database,
celltype_col,
single_unit_summary = "Mean",
complex_aggregation = "Minimum",
LR_combination = "Arithmetic",
min_percentile = 0.1,
style = NULL,
use_DEG = FALSE,
save_path = NULL,
parallel = FALSE,
n_cores = NULL
)Arguments
- seurat_obj
Seurat object
- database
Database name or path
- celltype_col
Column name for cell type labels
- single_unit_summary
Single-unit summary method
- complex_aggregation
Complex aggregation method
- LR_combination
L-R combination method
- min_percentile
Minimum expression percentage
- style
Preset style ("cpdb" for CellPhoneDB-like)
- use_DEG
Whether to filter by DEG
- save_path
Path to save results
- parallel
Whether to use parallel
- n_cores
Number of cores