Prepare data from a Seurat object for NOVA analysis.
Usage
SeuratToNOVA(
object,
assay = NULL,
slot = "data",
cluster_col = NULL,
min_cells = 3,
min_features = 0
)
Arguments
- object
Seurat object
- assay
Assay name
- slot
Data slot
- cluster_col
Column for cluster identity
- min_cells
Minimum cells per cluster
- min_features
Minimum features per cell (0 = no filter)
Value
List with expression matrix and cluster annotation
Examples
if (FALSE) { # \dontrun{
nova_input <- SeuratToNOVA(seurat_obj)
nova_input <- SeuratToNOVA(seurat_obj, cluster_col = "cell_type")
} # }