Supported species mapping

Returns a named vector mapping common species names to NCBI taxonomy IDs. NOVA supports 21 species through the HomoloGene database for cross-species gene symbol conversion.

Usage

supported_species()

Value

Named character vector: names are species, values are taxonomy IDs

Examples

supported_species()
#>                human                mouse           chimpanzee 
#>               "9606"              "10090"               "9598" 
#>                  dog               monkey               cattle 
#>               "9615"               "9544"               "9913" 
#>                  rat              chicken                 frog 
#>              "10116"               "9031"               "8364" 
#>            zebrafish             fruitfly             mosquito 
#>               "7955"               "7227"               "7165" 
#>             nematode           thalecress                 rice 
#>               "6239"               "3702"               "4530" 
#>      riceblastfungus           bakeryeast     neurosporacrassa 
#>             "318829"               "4932"               "5141" 
#>         fissionyeast eremotheciumgossypii  kluyveromyceslactis 
#>               "4896"              "33169"              "28985" 
# Get taxonomy ID for mouse
supported_species()["mouse"]
#>   mouse 
#> "10090"