getConfidentNormalCells Get at most top 30 confident normal cells from count matrix.

getConfidentNormalCells Get at most top 30 confident normal cells from count matrix.

Usage

getConfidentNormalCells(
  mtx,
  sample = "",
  par_cores = 20,
  AdditionalGeneSets = NULL,
  SCEVANsignatures = TRUE,
  organism = "human",
  output_dir = "./output"
)

Arguments

mtx

count matrix

sample

sample name (optional)

par_cores

number of cores (default 20)

AdditionalGeneSets

list of additional signatures of normal cell types (optional)

SCEVANsignatures

FALSE if you only want to use only the signatures specified in AdditionalGeneSets (default TRUE)