Write CytoSPACER Results — write_cytospace_results • CytoSPACER

Write CytoSPACER results to output files.

Usage

write_cytospace_results(
  results,
  output_dir,
  prefix = "",
  save_expression = TRUE,
  sparse_output = FALSE
)

Arguments

results: A list returned by run_cytospace
output_dir: Directory to save output files
prefix: Prefix for output file names
save_expression: Logical. If TRUE, save expression matrix. Default TRUE.
sparse_output: Logical. If TRUE, save expression in sparse MTX format.

Value

Invisibly returns the output directory path.

Examples

if (FALSE) { # \dontrun{
results <- run_cytospace(...)
write_cytospace_results(results, "output/", prefix = "analysis1_")
} # }