Skip to contents

Build Diffusion Operator (Pipeline)

Source: R/kernel.R
build_diffusion_operator.Rd

Builds diffusion operator from data in one step.

Usage

build_diffusion_operator(
  data,
  knn = 5,
  knn_max = NULL,
  decay = 1,
  distance = "euclidean",
  threshold = 1e-04,
  verbose = FALSE
)

Arguments

data

Matrix (cells x features)

knn

Number of neighbors

knn_max

Maximum neighbors

decay

Alpha decay parameter

distance

Distance metric

threshold

Kernel threshold

verbose

Verbosity level

Value

Row-stochastic diffusion operator