Retrieves a table from UniProt with all proteins for a certain organism.
Usage
all_uniprots(fields = "accession", reviewed = TRUE, organism = 9606L)
Arguments
- fields
Character vector of fields as defined by UniProt. For
possible values please refer to
https://www.uniprot.org/help/return_fields
- reviewed
Retrieve only reviewed (`TRUE`), only unreviewed (`FALSE`)
or both (`NULL`).
- organism
Character or integer: name or identifier of the organism.
Value
Data frame (tibble) with the requested UniProt entries and fields.
Examples
human_swissprot_entries <- all_uniprots(fields = 'id')
human_swissprot_entries
# # A tibble: 20,396 x 1
# `Entry name`
# <chr>
# 1 OR4K3_HUMAN
# 2 O52A1_HUMAN
# 3 O2AG1_HUMAN
# 4 O10S1_HUMAN
# 5 O11G2_HUMAN
# # . with 20,386 more rows
