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Metabolite ID translation tables from Chalmers Sysbio

Source: R/id_mapping.R
chalmers_gem_id_mapping_table.Rd

Metabolite ID translation tables from Chalmers Sysbio

Usage

chalmers_gem_id_mapping_table(to, from = "metabolicatlas", organism = "Human")

Arguments

to

Character: type of ID to translate to, either label used internally in this package, or a column name from "metabolites.tsv" distributed by Chalmers Sysbio. NSE is supported.

from

Character: type of ID to translate from, same format as "to".

organism

Character or integer: name or identifier of the organism. Supported taxons are 9606 (Homo sapiens), 10090 (Mus musculus), 10116 (Rattus norvegicu), 7955 (Danio rerio), 7227 (Drosophila melanogaster) and 6239 (Caenorhabditis elegans).

Value

Tibble with two columns, "From" and "To", with the corresponding ID types.

Examples

chalmers_gem_id_mapping_table('metabolicatlas', 'hmdb')