Statistics about literature curated ligand-receptor interactions
Source:R/intercell_curated.R
curated_ligrec_stats.RdStatistics about literature curated ligand-receptor interactions
Arguments
- ...
Passed to
curated_ligand_receptor_interactions, determines the set of all curated L-R interactions which will be compared against each of the individual resources.
Value
A data frame with estimated counts of curated ligand-receptor interactions for each L-R resource.
Details
The data frame contains the total number of interactions, the number of interactions which overlap with the set of curated interactions (curated_overlap), the number of interactions with literature references from the given resource (literature) and the number of interactions which are curated by the given resource (curated_self). This latter we defined according to our best knowledge, in many cases it's not possible to distinguish curated interactions). All these numbers are also presented as a percent of the total. Importantly, here we consider interactions curated only if they've been curated in a cell-cell communication context.