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Collects the names of the resources available in OmniPath for a certain query type and optionally for a dataset within that.

Usage

resources(query_type, datasets = NULL, generic_categories = NULL)

Arguments

query_type

one of the query types `interactions`, `enz_sub`, `complexes`, `annotations` or `intercell`

datasets

currently within the `interactions` query type only, multiple datasets are available: `omnipath`, `kinaseextra`, `pathwayextra`, `ligrecextra`, `dorothea`, `tf_target`, `tf_mirna`, `mirnatarget` and `lncrna_mrna`.

generic_categories

for the `intercell` query type, restrict the search for some generic categories e.g. `ligand` or `receptor`.

Value

a character vector with resource names

Examples

resources(query_type = "interactions")