Heatmap with LR pairs of celltype_sender and celltype_receiver
Usage
plot_cci_lrpairs(
object,
celltype_sender,
celltype_receiver,
top_lrpairs = 20,
color = NULL,
border_color = "black",
type = "sig",
fontsize_number = 5,
number_color = "black",
color_low = NULL,
color_high = NULL
)Arguments
- object
SpaTalk object generated from
dec_cci.- celltype_sender
Name of celltype_sender.
- celltype_receiver
Name of celltype_receiver.
- top_lrpairs
Number of top lrpairs for plotting. Default is
20.- color
Color for the cells in heatmap.
- border_color
color of cell borders on heatmap, use NA if no border should be drawn.
- type
Set 'sig' to plot significant LRI pairs or set 'number' to plot the number of spatial LRI pairs.
- fontsize_number
fontsize of the numbers displayed in cells.
- number_color
color of the text.
- color_low
For 'number' type, define the color for the lowest value.
- color_high
For 'number' type, define the color for the highest value.