Advanced Usage and Best Practices
Zaoqu Liu
2026-01-24
Source:vignettes/advanced-usage.Rmd
advanced-usage.RmdIntroduction
This guide covers advanced features and best practices for using scGate effectively in complex analysis scenarios.
Building Hierarchical Models
Multi-Level Gating Strategy
Similar to flow cytometry, scGate supports hierarchical gating:
# Build a hierarchical model for CD8+ T cells
cd8_model <- gating_model(
level = 1,
name = "Immune",
signature = c("PTPRC") # CD45
)
cd8_model <- gating_model(
model = cd8_model,
level = 1,
name = "notStromal",
signature = c("COL1A1", "COL1A2", "FAP"),
positive = FALSE
)
cd8_model <- gating_model(
model = cd8_model,
level = 2,
name = "Tcell",
signature = c("CD3D", "CD3E", "CD2")
)
cd8_model <- gating_model(
model = cd8_model,
level = 2,
name = "notBcell",
signature = c("MS4A1", "CD19"),
positive = FALSE
)
cd8_model <- gating_model(
model = cd8_model,
level = 3,
name = "CD8",
signature = c("CD8A", "CD8B")
)
cd8_model <- gating_model(
model = cd8_model,
level = 3,
name = "notCD4",
signature = c("CD4"),
positive = FALSE
)
# View the model
print(cd8_model)
#> levels use_as name signature
#> 1 level1 positive Immune PTPRC
#> 2 level1 negative notStromal COL1A1;COL1A2;FAP
#> 3 level2 positive Tcell CD3D;CD3E;CD2
#> 4 level2 negative notBcell MS4A1;CD19
#> 5 level3 positive CD8 CD8A;CD8B
#> 6 level3 negative notCD4 CD4Multi-Class Classification
Annotating Multiple Cell Types
# Load example data
data(query.seurat)
# Define multiple models
model_list <- list(
"Bcell" = gating_model(name = "Bcell", signature = c("MS4A1", "CD19")),
"Tcell" = gating_model(name = "Tcell", signature = c("CD3D", "CD3E")),
"Myeloid" = gating_model(name = "Myeloid", signature = c("CD14", "LYZ"))
)
# Apply all models simultaneously
query.seurat <- scGate(
data = query.seurat,
model = model_list,
reduction = "pca"
)
# View multi-class results
table(query.seurat$scGate_multi, useNA = "ifany")Working with Integrated Data
Assay Selection
# For integrated objects, specify the assay
seurat_obj <- scGate(
data = seurat_obj,
model = my_model,
assay = "RNA", # Use RNA assay for UCell scoring
reduction = "harmony" # Use Harmony for kNN
)Parameter Optimization
Key Parameters
| Parameter | Default | Description | Recommendation |
|---|---|---|---|
| pos.thr | 0.2 | Threshold for positive signatures | Lower (0.1-0.15) for rare populations |
| neg.thr | 0.2 | Threshold for negative signatures | Higher (0.25-0.3) for stringent filtering |
| k.param | 30 | Number of neighbors for kNN smoothing | Higher (50-100) for noisy data |
| smooth.decay | 0.1 | Decay rate for neighbor weights | Lower (0.05) for more smoothing |
| param_decay | 0.25 | Parameter decay across levels | Higher (0.3-0.4) for deep hierarchies |
| min.cells | 30 | Minimum cells for clustering | Lower (10-20) for small datasets |
Threshold Tuning
# Test different thresholds
data(query.seurat)
model <- gating_model(name = "Tcell", signature = c("CD3D", "CD3E"))
# Compare thresholds
results <- list()
for (thr in c(0.1, 0.2, 0.3)) {
temp <- scGate(query.seurat, model = model,
pos.thr = thr, reduction = "pca")
results[[paste0("thr_", thr)]] <- table(temp$is.pure)["Pure"]
}
# Display results
data.frame(
Threshold = c(0.1, 0.2, 0.3),
Pure_Cells = unlist(results)
)Performance Evaluation
Using Ground Truth
# Demonstrate performance metrics with simulated data
set.seed(42)
n_cells <- 100
# Simulate ground truth and predictions
ground_truth <- sample(c(TRUE, FALSE), n_cells, replace = TRUE, prob = c(0.3, 0.7))
predictions <- ground_truth
# Add some noise
predictions[sample(which(ground_truth), 3)] <- FALSE
predictions[sample(which(!ground_truth), 5)] <- TRUE
# Calculate metrics
metrics <- performance.metrics(
actual = ground_truth,
pred = predictions
)
print(metrics)
#> PREC REC MCC
#> 0.8611111 0.9117647 0.8250498Interpreting Metrics
# Create interpretation guide
interpretation <- data.frame(
Metric = c("Precision (PREC)", "Recall (REC)", "MCC"),
Range = c("0-1", "0-1", "-1 to 1"),
Interpretation = c(
"Fraction of 'Pure' cells that are true positives",
"Fraction of true positives identified as 'Pure'",
"Overall classification quality (0 = random, 1 = perfect)"
)
)
knitr::kable(interpretation)| Metric | Range | Interpretation |
|---|---|---|
| Precision (PREC) | 0-1 | Fraction of ‘Pure’ cells that are true positives |
| Recall (REC) | 0-1 | Fraction of true positives identified as ‘Pure’ |
| MCC | -1 to 1 | Overall classification quality (0 = random, 1 = perfect) |
Parallel Processing
Multi-core Processing
library(BiocParallel)
# Simple multi-core
result <- scGate(
data = seurat_obj,
model = model_list,
ncores = 4
)
# Custom BPPARAM for more control
result <- scGate(
data = seurat_obj,
model = model_list,
BPPARAM = MulticoreParam(
workers = 4,
progressbar = TRUE
)
)Gene Blacklisting
Default Blacklist
scGate excludes certain genes from dimensionality reduction:
# View default blacklist categories
data(genes.blacklist.default)
names(genes.blacklist.default)
#> [1] "Mm" "Hs"
# View genes in each category
lapply(genes.blacklist.default, head)
#> $Mm
#> $Mm$cellCycle.G1S
#> ENSMUSG00000022360 ENSMUSG00000030528 ENSMUSG00000034329 ENSMUSG00000028282
#> "Atad2" "Blm" "Brip1" "Casp8ap2"
#> ENSMUSG00000028212 ENSMUSG00000000028 ENSMUSG00000017499 ENSMUSG00000055612
#> "Ccne2" "Cdc45" "Cdc6" "Cdca7"
#> ENSMUSG00000022945 ENSMUSG00000042489 ENSMUSG00000022422 ENSMUSG00000037474
#> "Chaf1b" "Clspn" "Dscc1" "Dtl"
#> ENSMUSG00000046179 ENSMUSG00000039748 ENSMUSG00000024742 ENSMUSG00000031821
#> "E2f8" "Exo1" "Fen1" "Gins2"
#> ENSMUSG00000006715 ENSMUSG00000025001 ENSMUSG00000002870 ENSMUSG00000022673
#> "Gmnn" "Hells" "Mcm2" "Mcm4"
#> ENSMUSG00000005410 ENSMUSG00000026355 ENSMUSG00000024151 ENSMUSG00000028693
#> "Mcm5" "Mcm6" "Msh2" "Nasp"
#> ENSMUSG00000027342 ENSMUSG00000006678 ENSMUSG00000030726 ENSMUSG00000025395
#> "Pcna" "Pola1" "Pold3" "Prim1"
#> ENSMUSG00000027323 ENSMUSG00000030346 ENSMUSG00000023104 ENSMUSG00000028884
#> "Rad51" "Rad51ap1" "Rfc2" "Rpa2"
#> ENSMUSG00000030978 ENSMUSG00000020649 ENSMUSG00000004642 ENSMUSG00000032397
#> "Rrm1" "Rrm2" "Slbp" "Tipin"
#> ENSMUSG00000025747 ENSMUSG00000041712 ENSMUSG00000001228 ENSMUSG00000029591
#> "Tyms" "Ubr7" "Uhrf1" "Ung"
#> ENSMUSG00000028560 ENSMUSG00000027242
#> "Usp1" "Wdr76"
#>
#> $Mm$cellCycle.G2M
#> ENSMUSG00000036777 ENSMUSG00000015749 ENSMUSG00000027496 ENSMUSG00000020897
#> "Anln" "Anp32e" "Aurka" "Aurkb"
#> ENSMUSG00000017716 ENSMUSG00000027379 ENSMUSG00000009575 ENSMUSG00000032218
#> "Birc5" "Bub1" "Cbx5" "Ccnb2"
#> ENSMUSG00000006398 ENSMUSG00000044201 ENSMUSG00000048922 ENSMUSG00000023505
#> "Cdc20" "Cdc25c" "Cdca2" "Cdca3"
#> ENSMUSG00000028873 ENSMUSG00000019942 ENSMUSG00000029177 ENSMUSG00000045328
#> "Cdca8" "Cdk1" "Cenpa" "Cenpe"
#> ENSMUSG00000026605 ENSMUSG00000037725 ENSMUSG00000048327 ENSMUSG00000040549
#> "Cenpf" "Ckap2" "Ckap2l" "Ckap5"
#> ENSMUSG00000028044 ENSMUSG00000062248 ENSMUSG00000005698 ENSMUSG00000037544
#> "Cks1b" "Cks2" "Ctcf" "Dlgap5"
#> ENSMUSG00000027699 ENSMUSG00000035293 ENSMUSG00000074802 ENSMUSG00000022385
#> "Ect2" "G2e3" "Gas2l3" "Gtse1"
#> ENSMUSG00000044783 ENSMUSG00000054717 ENSMUSG00000020330 ENSMUSG00000012443
#> "Hjurp" "Hmgb2" "Hmmr" "Kif11"
#> ENSMUSG00000024795 ENSMUSG00000032254 ENSMUSG00000028678 ENSMUSG00000004880
#> "Kif20b" "Kif23" "Kif2c" "Lbr"
#> ENSMUSG00000031004 ENSMUSG00000038252 ENSMUSG00000024056 ENSMUSG00000026622
#> "Mki67" "Ncapd2" "Ndc80" "Nek2"
#> ENSMUSG00000026683 ENSMUSG00000027306 ENSMUSG00000068744 ENSMUSG00000022391
#> "Nuf2" "Nusap1" "Psrc1" "Rangap1"
#> ENSMUSG00000034349 ENSMUSG00000037313 ENSMUSG00000019961 ENSMUSG00000020914
#> "Smc4" "Tacc3" "Tmpo" "Top2a"
#> ENSMUSG00000027469 ENSMUSG00000038379 ENSMUSG00000036752 ENSMUSG00000001403
#> "Tpx2" "Ttk" "Tubb4b" "Ube2c"
#>
#> $Mm$HeatShock
#> ENSMUSG00000018446 ENSMUSG00000059796 ENSMUSG00000046865 ENSMUSG00000021270
#> "C1qbp" "Eif4a1" "Fbl" "Hsp90aa1"
#> ENSMUSG00000025980 ENSMUSG00000073676 ENSMUSG00000033307 ENSMUSG00000026234
#> "Hspd1" "Hspe1" "Mif" "Ncl"
#> ENSMUSG00000001056 ENSMUSG00000037601 ENSMUSG00000015176 ENSMUSG00000026020
#> "Nhp2" "Nme1" "Nolc1" "Nop58"
#> ENSMUSG00000025364 ENSMUSG00000029430 ENSMUSG00000005732 ENSMUSG00000054766
#> "Pa2g4" "Ran" "Ranbp1" "Set"
#> ENSMUSG00000023004
#> "Tuba1b"
#>
#> $Mm$Mito
#> ENSMUSG00000064357 ENSMUSG00000064356 ENSMUSG00000064351 ENSMUSG00000064354
#> "mt-Atp6" "mt-Atp8" "mt-Co1" "mt-Co2"
#> ENSMUSG00000064358 ENSMUSG00000064370 ENSMUSG00000064341 ENSMUSG00000064345
#> "mt-Co3" "mt-Cytb" "mt-Nd1" "mt-Nd2"
#> ENSMUSG00000064360 ENSMUSG00000064363 ENSMUSG00000065947 ENSMUSG00000064367
#> "mt-Nd3" "mt-Nd4" "mt-Nd4l" "mt-Nd5"
#> ENSMUSG00000064368 ENSMUSG00000064337 ENSMUSG00000064339 ENSMUSG00000064347
#> "mt-Nd6" "mt-Rnr1" "mt-Rnr2" "mt-Ta"
#> ENSMUSG00000064349 ENSMUSG00000064353 ENSMUSG00000064369 ENSMUSG00000064336
#> "mt-Tc" "mt-Td" "mt-Te" "mt-Tf"
#> ENSMUSG00000064359 ENSMUSG00000064364 ENSMUSG00000064342 ENSMUSG00000064355
#> "mt-Tg" "mt-Th" "mt-Ti" "mt-Tk"
#> ENSMUSG00000064340 ENSMUSG00000064366 ENSMUSG00000064344 ENSMUSG00000064348
#> "mt-Tl1" "mt-Tl2" "mt-Tm" "mt-Tn"
#> ENSMUSG00000064372 ENSMUSG00000064343 ENSMUSG00000064361 ENSMUSG00000064352
#> "mt-Tp" "mt-Tq" "mt-Tr" "mt-Ts1"
#> ENSMUSG00000064365 ENSMUSG00000064371 ENSMUSG00000064338 ENSMUSG00000064346
#> "mt-Ts2" "mt-Tt" "mt-Tv" "mt-Tw"
#> ENSMUSG00000064350
#> "mt-Ty"
#>
#> $Mm$Ribo
#> ENSMUSG00000008682 ENSMUSG00000080859 ENSMUSG00000074108 ENSMUSG00000058443
#> "Rpl10" "Rpl10-ps1" "Rpl10-ps2" "Rpl10-ps3"
#> ENSMUSG00000083113 ENSMUSG00000110679 ENSMUSG00000080885 ENSMUSG00000037805
#> "Rpl10-ps4" "Rpl10-ps5" "Rpl10-ps6" "Rpl10a"
#> ENSMUSG00000084416 ENSMUSG00000061988 ENSMUSG00000116202 ENSMUSG00000080198
#> "Rpl10a-ps1" "Rpl10a-ps2" "Rpl10a-ps3" "Rpl10a-ps4"
#> ENSMUSG00000060499 ENSMUSG00000059291 ENSMUSG00000038900 ENSMUSG00000080054
#> "Rpl10l" "Rpl11" "Rpl12" "Rpl12-ps1"
#> ENSMUSG00000083792 ENSMUSG00000000740 ENSMUSG00000082806 ENSMUSG00000114325
#> "Rpl12-ps2" "Rpl13" "Rpl13-ps1" "Rpl13-ps2"
#> ENSMUSG00000059835 ENSMUSG00000104215 ENSMUSG00000082964 ENSMUSG00000059776
#> "Rpl13-ps3" "Rpl13-ps4" "Rpl13-ps5" "Rpl13-ps6"
#> ENSMUSG00000074129 ENSMUSG00000062083 ENSMUSG00000025794 ENSMUSG00000046721
#> "Rpl13a" "Rpl13a-ps1" "Rpl14" "Rpl14-ps1"
#> ENSMUSG00000012405 ENSMUSG00000082874 ENSMUSG00000098915 ENSMUSG00000061167
#> "Rpl15" "Rpl15-ps1" "Rpl15-ps2" "Rpl15-ps3"
#> ENSMUSG00000082508 ENSMUSG00000108442 ENSMUSG00000057262 ENSMUSG00000062328
#> "Rpl15-ps4" "Rpl15-ps5" "Rpl15-ps6" "Rpl17"
#> ENSMUSG00000082804 ENSMUSG00000081895 ENSMUSG00000090242 ENSMUSG00000112769
#> "Rpl17-ps1" "Rpl17-ps10" "Rpl17-ps11" "Rpl17-ps2"
#> ENSMUSG00000113948 ENSMUSG00000084345 ENSMUSG00000081855 ENSMUSG00000113297
#> "Rpl17-ps3" "Rpl17-ps4" "Rpl17-ps5" "Rpl17-ps6"
#> ENSMUSG00000115512 ENSMUSG00000082035 ENSMUSG00000066543 ENSMUSG00000059070
#> "Rpl17-ps7" "Rpl17-ps8" "Rpl17-ps9" "Rpl18"
#> ENSMUSG00000081382 ENSMUSG00000053173 ENSMUSG00000045128 ENSMUSG00000059033
#> "Rpl18-ps1" "Rpl18-ps2" "Rpl18a" "Rpl18a-ps1"
#> ENSMUSG00000105464 ENSMUSG00000104584 ENSMUSG00000108492 ENSMUSG00000017404
#> "Rpl18a-ps2" "Rpl18a-ps3" "Rpl18a-ps4" "Rpl19"
#> ENSMUSG00000064281 ENSMUSG00000108401 ENSMUSG00000081094 ENSMUSG00000082109
#> "Rpl19-ps1" "Rpl19-ps10" "Rpl19-ps11" "Rpl19-ps12"
#> ENSMUSG00000112582 ENSMUSG00000115737 ENSMUSG00000091818 ENSMUSG00000115630
#> "Rpl19-ps2" "Rpl19-ps3" "Rpl19-ps4" "Rpl19-ps5"
#> ENSMUSG00000116090 ENSMUSG00000117405 ENSMUSG00000108813 ENSMUSG00000041453
#> "Rpl19-ps6" "Rpl19-ps7" "Rpl19-ps9" "Rpl21"
#> ENSMUSG00000102606 ENSMUSG00000105359 ENSMUSG00000105144 ENSMUSG00000058700
#> "Rpl21-ps1" "Rpl21-ps10" "Rpl21-ps11" "Rpl21-ps12"
#> ENSMUSG00000056777 ENSMUSG00000062152 ENSMUSG00000083596 ENSMUSG00000113937
#> "Rpl21-ps13" "Rpl21-ps14" "Rpl21-ps15" "Rpl21-ps2"
#> ENSMUSG00000060566 ENSMUSG00000072714 ENSMUSG00000071475 ENSMUSG00000059912
#> "Rpl21-ps3" "Rpl21-ps4" "Rpl21-ps5" "Rpl21-ps6"
#> ENSMUSG00000094256 ENSMUSG00000061684 ENSMUSG00000084017 ENSMUSG00000028936
#> "Rpl21-ps7" "Rpl21-ps8" "Rpl21-ps9" "Rpl22"
#> ENSMUSG00000080877 ENSMUSG00000039221 ENSMUSG00000071415 ENSMUSG00000058546
#> "Rpl22-ps1" "Rpl22l1" "Rpl23" "Rpl23a"
#> ENSMUSG00000070896 ENSMUSG00000101327 ENSMUSG00000100513 ENSMUSG00000094079
#> "Rpl23a-ps1" "Rpl23a-ps10" "Rpl23a-ps11" "Rpl23a-ps12"
#> ENSMUSG00000082146 ENSMUSG00000083723 ENSMUSG00000081968 ENSMUSG00000078126
#> "Rpl23a-ps13" "Rpl23a-ps14" "Rpl23a-ps2" "Rpl23a-ps3"
#> ENSMUSG00000081445 ENSMUSG00000102220 ENSMUSG00000082732 ENSMUSG00000101137
#> "Rpl23a-ps4" "Rpl23a-ps5" "Rpl23a-ps6" "Rpl23a-ps7"
#> ENSMUSG00000100734 ENSMUSG00000102041 ENSMUSG00000098274 ENSMUSG00000060938
#> "Rpl23a-ps8" "Rpl23a-ps9" "Rpl24" "Rpl26"
#> ENSMUSG00000111300 ENSMUSG00000066489 ENSMUSG00000103944 ENSMUSG00000059150
#> "Rpl26-ps1" "Rpl26-ps2" "Rpl26-ps3" "Rpl26-ps4"
#> ENSMUSG00000081125 ENSMUSG00000111864 ENSMUSG00000063316 ENSMUSG00000079137
#> "Rpl26-ps5" "Rpl26-ps6" "Rpl27" "Rpl27-ps1"
#> ENSMUSG00000082171 ENSMUSG00000073640 ENSMUSG00000046364 ENSMUSG00000061488
#> "Rpl27-ps2" "Rpl27-ps3" "Rpl27a" "Rpl27a-ps1"
#> ENSMUSG00000058430 ENSMUSG00000062461 ENSMUSG00000030432 ENSMUSG00000058603
#> "Rpl27a-ps2" "Rpl27a-ps4" "Rpl28" "Rpl28-ps1"
#> ENSMUSG00000102137 ENSMUSG00000079942 ENSMUSG00000090549 ENSMUSG00000048758
#> "Rpl28-ps2" "Rpl28-ps3" "Rpl28-ps4" "Rpl29"
#> ENSMUSG00000090095 ENSMUSG00000094772 ENSMUSG00000091785 ENSMUSG00000060036
#> "Rpl29-ps1" "Rpl29-ps2" "Rpl29-ps5" "Rpl3"
#> ENSMUSG00000084349 ENSMUSG00000084131 ENSMUSG00000058600 ENSMUSG00000057696
#> "Rpl3-ps1" "Rpl3-ps2" "Rpl30" "Rpl30-ps1"
#> ENSMUSG00000083411 ENSMUSG00000081461 ENSMUSG00000090007 ENSMUSG00000080873
#> "Rpl30-ps10" "Rpl30-ps11" "Rpl30-ps2" "Rpl30-ps3"
#> ENSMUSG00000082641 ENSMUSG00000101328 ENSMUSG00000062582 ENSMUSG00000085791
#> "Rpl30-ps5" "Rpl30-ps6" "Rpl30-ps8" "Rpl30-ps9"
#> ENSMUSG00000073702 ENSMUSG00000066389 ENSMUSG00000070667 ENSMUSG00000062896
#> "Rpl31" "Rpl31-ps1" "Rpl31-ps10" "Rpl31-ps11"
#> ENSMUSG00000116648 ENSMUSG00000051723 ENSMUSG00000094191 ENSMUSG00000097304
#> "Rpl31-ps12" "Rpl31-ps13" "Rpl31-ps14" "Rpl31-ps15"
#> ENSMUSG00000097803 ENSMUSG00000072255 ENSMUSG00000097719 ENSMUSG00000113952
#> "Rpl31-ps16" "Rpl31-ps17" "Rpl31-ps18" "Rpl31-ps2"
#> ENSMUSG00000058607 ENSMUSG00000096269 ENSMUSG00000081925 ENSMUSG00000097106
#> "Rpl31-ps20" "Rpl31-ps21" "Rpl31-ps22" "Rpl31-ps23"
#> ENSMUSG00000097264 ENSMUSG00000097897 ENSMUSG00000114698 ENSMUSG00000090753
#> "Rpl31-ps24" "Rpl31-ps25" "Rpl31-ps3" "Rpl31-ps4"
#> ENSMUSG00000082716 ENSMUSG00000082532 ENSMUSG00000097255 ENSMUSG00000067870
#> "Rpl31-ps5" "Rpl31-ps6" "Rpl31-ps7" "Rpl31-ps8"
#> ENSMUSG00000094122 ENSMUSG00000057841 ENSMUSG00000068969 ENSMUSG00000111356
#> "Rpl31-ps9" "Rpl32" "Rpl32-ps" "Rpl32l"
#> ENSMUSG00000062006 ENSMUSG00000068396 ENSMUSG00000061669 ENSMUSG00000062997
#> "Rpl34" "Rpl34-ps1" "Rpl34-ps2" "Rpl35"
#> ENSMUSG00000080855 ENSMUSG00000060636 ENSMUSG00000081214 ENSMUSG00000067575
#> "Rpl35-ps1" "Rpl35a" "Rpl35a-ps2" "Rpl35a-ps3"
#> ENSMUSG00000083424 ENSMUSG00000093885 ENSMUSG00000094664 ENSMUSG00000094557
#> "Rpl35a-ps4" "Rpl35a-ps5" "Rpl35a-ps6" "Rpl35a-ps7"
#> ENSMUSG00000057863 ENSMUSG00000081318 ENSMUSG00000084186 ENSMUSG00000091845
#> "Rpl36" "Rpl36-ps1" "Rpl36-ps10" "Rpl36-ps12"
#> ENSMUSG00000024205 ENSMUSG00000066629 ENSMUSG00000093922 ENSMUSG00000080754
#> "Rpl36-ps2" "Rpl36-ps3" "Rpl36-ps4" "Rpl36-ps7"
#> ENSMUSG00000075390 ENSMUSG00000106476 ENSMUSG00000079435 ENSMUSG00000060377
#> "Rpl36-ps8" "Rpl36-ps9" "Rpl36a" "Rpl36a-ps1"
#> ENSMUSG00000105388 ENSMUSG00000071141 ENSMUSG00000084261 ENSMUSG00000049751
#> "Rpl36a-ps2" "Rpl36a-ps3" "Rpl36a-ps4" "Rpl36al"
#> ENSMUSG00000041841 ENSMUSG00000117711 ENSMUSG00000046330 ENSMUSG00000117754
#> "Rpl37" "Rpl37-ps1" "Rpl37a" "Rpl37a-ps2"
#> ENSMUSG00000072692 ENSMUSG00000057322 ENSMUSG00000083326 ENSMUSG00000080921
#> "Rpl37rt" "Rpl38" "Rpl38-ps1" "Rpl38-ps2"
#> ENSMUSG00000079641 ENSMUSG00000036305 ENSMUSG00000039209 ENSMUSG00000002500
#> "Rpl39" "Rpl39-ps" "Rpl39l" "Rpl3l"
#> ENSMUSG00000032399 ENSMUSG00000093674 ENSMUSG00000093406 ENSMUSG00000058558
#> "Rpl4" "Rpl41" "Rpl48-ps1" "Rpl5"
#> ENSMUSG00000082193 ENSMUSG00000082064 ENSMUSG00000029614 ENSMUSG00000091086
#> "Rpl5-ps1" "Rpl5-ps2" "Rpl6" "Rpl6l"
#> ENSMUSG00000043716 ENSMUSG00000106926 ENSMUSG00000025922 ENSMUSG00000081281
#> "Rpl7" "Rpl7-ps7" "Rpl7-ps8" "Rpl7-ps9"
#> ENSMUSG00000062647 ENSMUSG00000113075 ENSMUSG00000101502 ENSMUSG00000067147
#> "Rpl7a" "Rpl7a-ps1" "Rpl7a-ps10" "Rpl7a-ps11"
#> ENSMUSG00000083440 ENSMUSG00000082621 ENSMUSG00000107945 ENSMUSG00000106283
#> "Rpl7a-ps12" "Rpl7a-ps13" "Rpl7a-ps14" "Rpl7a-ps2"
#> ENSMUSG00000068579 ENSMUSG00000116630 ENSMUSG00000071052 ENSMUSG00000117463
#> "Rpl7a-ps3" "Rpl7a-ps4" "Rpl7a-ps5" "Rpl7a-ps6"
#> ENSMUSG00000106258 ENSMUSG00000070778 ENSMUSG00000081747 ENSMUSG00000063888
#> "Rpl7a-ps7" "Rpl7a-ps8" "Rpl7a-ps9" "Rpl7l1"
#> ENSMUSG00000081323 ENSMUSG00000003970 ENSMUSG00000047215 ENSMUSG00000081906
#> "Rpl7l1-ps1" "Rpl8" "Rpl9" "Rpl9-ps1"
#> ENSMUSG00000082749 ENSMUSG00000085718 ENSMUSG00000094989 ENSMUSG00000092485
#> "Rpl9-ps2" "Rpl9-ps3" "Rpl9-ps4" "Rpl9-ps5"
#> ENSMUSG00000062456 ENSMUSG00000047965 ENSMUSG00000105045 ENSMUSG00000092437
#> "Rpl9-ps6" "Rpl9-ps7" "Rpl9-ps8" "Rpl9-ps9"
#> ENSMUSG00000067274 ENSMUSG00000081640 ENSMUSG00000007892 ENSMUSG00000084185
#> "Rplp0" "Rplp0-ps1" "Rplp1" "Rplp1-ps1"
#> ENSMUSG00000025508 ENSMUSG00000052146 ENSMUSG00000060438 ENSMUSG00000099764
#> "Rplp2" "Rps10" "Rps10-ps1" "Rps10-ps2"
#> ENSMUSG00000082991 ENSMUSG00000083988 ENSMUSG00000003429 ENSMUSG00000090516
#> "Rps10-ps3" "Rps10-ps4" "Rps11" "Rps11-ps1"
#> ENSMUSG00000081929 ENSMUSG00000081715 ENSMUSG00000046620 ENSMUSG00000082780
#> "Rps11-ps2" "Rps11-ps3" "Rps11-ps4" "Rps11-ps5"
#> ENSMUSG00000061983 ENSMUSG00000082746 ENSMUSG00000070692 ENSMUSG00000094238
#> "Rps12" "Rps12-ps1" "Rps12-ps10" "Rps12-ps11"
#> ENSMUSG00000093990 ENSMUSG00000096763 ENSMUSG00000095499 ENSMUSG00000095017
#> "Rps12-ps12" "Rps12-ps13" "Rps12-ps14" "Rps12-ps15"
#> ENSMUSG00000096437 ENSMUSG00000095137 ENSMUSG00000096135 ENSMUSG00000082481
#> "Rps12-ps16" "Rps12-ps17" "Rps12-ps18" "Rps12-ps19"
#> ENSMUSG00000115595 ENSMUSG00000094015 ENSMUSG00000096362 ENSMUSG00000095277
#> "Rps12-ps2" "Rps12-ps20" "Rps12-ps21" "Rps12-ps22"
#> ENSMUSG00000093796 ENSMUSG00000098181 ENSMUSG00000081103 ENSMUSG00000067038
#> "Rps12-ps23" "Rps12-ps24" "Rps12-ps26" "Rps12-ps3"
#> ENSMUSG00000109509 ENSMUSG00000081565 ENSMUSG00000096831 ENSMUSG00000081625
#> "Rps12-ps4" "Rps12-ps5" "Rps12-ps6" "Rps12-ps7"
#> ENSMUSG00000069862 ENSMUSG00000078087 ENSMUSG00000090862 ENSMUSG00000066362
#> "Rps12-ps9" "Rps12l1" "Rps13" "Rps13-ps1"
#> ENSMUSG00000069972 ENSMUSG00000081378 ENSMUSG00000082626 ENSMUSG00000082987
#> "Rps13-ps2" "Rps13-ps4" "Rps13-ps5" "Rps13-ps6"
#> ENSMUSG00000081617 ENSMUSG00000081538 ENSMUSG00000024608 ENSMUSG00000063457
#> "Rps13-ps7" "Rps13-ps8" "Rps14" "Rps15"
#> ENSMUSG00000071419 ENSMUSG00000118264 ENSMUSG00000008683 ENSMUSG00000056877
#> "Rps15-ps2" "Rps15-ps3" "Rps15a" "Rps15a-ps1"
#> ENSMUSG00000067351 ENSMUSG00000084314 ENSMUSG00000083757 ENSMUSG00000067058
#> "Rps15a-ps2" "Rps15a-ps3" "Rps15a-ps4" "Rps15a-ps5"
#> ENSMUSG00000083022 ENSMUSG00000081087 ENSMUSG00000084403 ENSMUSG00000037563
#> "Rps15a-ps6" "Rps15a-ps7" "Rps15a-ps8" "Rps16"
#> ENSMUSG00000060419 ENSMUSG00000096258 ENSMUSG00000061787 ENSMUSG00000114238
#> "Rps16-ps2" "Rps16-ps3" "Rps17" "Rps17-ps1"
#> ENSMUSG00000008668 ENSMUSG00000083914 ENSMUSG00000083786 ENSMUSG00000057657
#> "Rps18" "Rps18-ps1" "Rps18-ps2" "Rps18-ps3"
#> ENSMUSG00000097346 ENSMUSG00000113061 ENSMUSG00000069117 ENSMUSG00000040952
#> "Rps18-ps4" "Rps18-ps5" "Rps18-ps6" "Rps19"
#> ENSMUSG00000096681 ENSMUSG00000089800 ENSMUSG00000089839 ENSMUSG00000097552
#> "Rps19-ps1" "Rps19-ps10" "Rps19-ps11" "Rps19-ps12"
#> ENSMUSG00000095150 ENSMUSG00000082781 ENSMUSG00000094974 ENSMUSG00000080059
#> "Rps19-ps13" "Rps19-ps14" "Rps19-ps2" "Rps19-ps3"
#> ENSMUSG00000096699 ENSMUSG00000097679 ENSMUSG00000096942 ENSMUSG00000080006
#> "Rps19-ps4" "Rps19-ps5" "Rps19-ps6" "Rps19-ps7"
#> ENSMUSG00000096920 ENSMUSG00000068689 ENSMUSG00000051518 ENSMUSG00000044533
#> "Rps19-ps8" "Rps19-ps9" "Rps19bp1" "Rps2"
#> ENSMUSG00000091957 ENSMUSG00000104280 ENSMUSG00000111438 ENSMUSG00000081684
#> "Rps2-ps10" "Rps2-ps11" "Rps2-ps12" "Rps2-ps13"
#> ENSMUSG00000103903 ENSMUSG00000111177 ENSMUSG00000084373 ENSMUSG00000098713
#> "Rps2-ps2" "Rps2-ps3" "Rps2-ps4" "Rps2-ps5"
#> ENSMUSG00000095427 ENSMUSG00000116825 ENSMUSG00000118161 ENSMUSG00000080731
#> "Rps2-ps6" "Rps2-ps7" "Rps2-ps8" "Rps2-ps9"
#> ENSMUSG00000028234 ENSMUSG00000039001 ENSMUSG00000049517 ENSMUSG00000100755
#> "Rps20" "Rps21" "Rps23" "Rps23-ps1"
#> ENSMUSG00000066902 ENSMUSG00000065952 ENSMUSG00000025290 ENSMUSG00000069125
#> "Rps23-ps2" "Rps23rg1" "Rps24" "Rps24-ps2"
#> ENSMUSG00000081049 ENSMUSG00000009927 ENSMUSG00000067344 ENSMUSG00000025362
#> "Rps24-ps3" "Rps25" "Rps25-ps1" "Rps26"
#> ENSMUSG00000059775 ENSMUSG00000090733 ENSMUSG00000081429 ENSMUSG00000020460
#> "Rps26-ps1" "Rps27" "Rps27-ps1" "Rps27a"
#> ENSMUSG00000101501 ENSMUSG00000058838 ENSMUSG00000036781 ENSMUSG00000050621
#> "Rps27a-ps1" "Rps27a-ps2" "Rps27l" "Rps27rt"
#> ENSMUSG00000067288 ENSMUSG00000034892 ENSMUSG00000084392 ENSMUSG00000030744
#> "Rps28" "Rps29" "Rps29-ps" "Rps3"
#> ENSMUSG00000028081 ENSMUSG00000062611 ENSMUSG00000059751 ENSMUSG00000063171
#> "Rps3a1" "Rps3a2" "Rps3a3" "Rps4l"
#> ENSMUSG00000046411 ENSMUSG00000031320 ENSMUSG00000104699 ENSMUSG00000012848
#> "Rps4l-ps" "Rps4x" "Rps4x-ps" "Rps5"
#> ENSMUSG00000028495 ENSMUSG00000063875 ENSMUSG00000056772 ENSMUSG00000082465
#> "Rps6" "Rps6-ps1" "Rps6-ps2" "Rps6-ps3"
#> ENSMUSG00000081406 ENSMUSG00000003644 ENSMUSG00000023809 ENSMUSG00000031309
#> "Rps6-ps4" "Rps6ka1" "Rps6ka2" "Rps6ka3"
#> ENSMUSG00000024952 ENSMUSG00000021180 ENSMUSG00000025665 ENSMUSG00000020516
#> "Rps6ka4" "Rps6ka5" "Rps6ka6" "Rps6kb1"
#> ENSMUSG00000024830 ENSMUSG00000089872 ENSMUSG00000019235 ENSMUSG00000061477
#> "Rps6kb2" "Rps6kc1" "Rps6kl1" "Rps7"
#> ENSMUSG00000110434 ENSMUSG00000112105 ENSMUSG00000095597 ENSMUSG00000047675
#> "Rps7-ps1" "Rps7-ps2" "Rps7-ps3" "Rps8"
#> ENSMUSG00000071303 ENSMUSG00000083481 ENSMUSG00000081979 ENSMUSG00000074547
#> "Rps8-ps1" "Rps8-ps2" "Rps8-ps3" "Rps8-ps4"
#> ENSMUSG00000082901 ENSMUSG00000006333 ENSMUSG00000032518 ENSMUSG00000102117
#> "Rps8-ps5" "Rps9" "Rpsa" "Rpsa-ps1"
#> ENSMUSG00000047676 ENSMUSG00000082978 ENSMUSG00000080746 ENSMUSG00000045055
#> "Rpsa-ps10" "Rpsa-ps11" "Rpsa-ps12" "Rpsa-ps2"
#> ENSMUSG00000083580 ENSMUSG00000081076 ENSMUSG00000081695 ENSMUSG00000117544
#> "Rpsa-ps3" "Rpsa-ps4" "Rpsa-ps5" "Rpsa-ps6"
#> ENSMUSG00000117438 ENSMUSG00000117578 ENSMUSG00000082895
#> "Rpsa-ps7" "Rpsa-ps8" "Rpsa-ps9"
#>
#> $Mm$IfnResp
#> ENSMUSG00000034459 ENSMUSG00000079339 ENSMUSG00000067297 ENSMUSG00000045932
#> "Ifit1" "Ifit1bl1" "Ifit1bl2" "Ifit2"
#> ENSMUSG00000074896 ENSMUSG00000062488 ENSMUSG00000025491 ENSMUSG00000045777
#> "Ifit3" "Ifit3b" "Ifitm1" "Ifitm10"
#> ENSMUSG00000060591 ENSMUSG00000025492 ENSMUSG00000025489 ENSMUSG00000059108
#> "Ifitm2" "Ifitm3" "Ifitm5" "Ifitm6"
#> ENSMUSG00000065968 ENSMUSG00000018899 ENSMUSG00000031627 ENSMUSG00000044030
#> "Ifitm7" "Irf1" "Irf2" "Irf2bp1"
#> ENSMUSG00000051495 ENSMUSG00000034168 ENSMUSG00000003184 ENSMUSG00000021356
#> "Irf2bp2" "Irf2bpl" "Irf3" "Irf4"
#> ENSMUSG00000029771 ENSMUSG00000026638 ENSMUSG00000025498 ENSMUSG00000041515
#> "Irf5" "Irf6" "Irf7" "Irf8"
#> ENSMUSG00000002325 ENSMUSG00000035692 ENSMUSG00000039236 ENSMUSG00000048039
#> "Irf9" "Isg15" "Isg20" "Isg20l2"
#>
#>
#> $Hs
#> $Hs$cellCycle.G1S
#> ENSG00000156802 ENSG00000197299 ENSG00000136492 ENSG00000288475 ENSG00000175305
#> "ATAD2" "BLM" "BRIP1" "CASP8AP2" "CCNE2"
#> ENSG00000093009 ENSG00000094804 ENSG00000144354 ENSG00000159259 ENSG00000092853
#> "CDC45" "CDC6" "CDCA7" "CHAF1B" "CLSPN"
#> ENSG00000136982 ENSG00000143476 ENSG00000129173 ENSG00000174371 ENSG00000168496
#> "DSCC1" "DTL" "E2F8" "EXO1" "FEN1"
#> ENSG00000131153 ENSG00000112312 ENSG00000119969 ENSG00000073111 ENSG00000104738
#> "GINS2" "GMNN" "HELLS" "MCM2" "MCM4"
#> ENSG00000100297 ENSG00000076003 ENSG00000095002 ENSG00000132780 ENSG00000132646
#> "MCM5" "MCM6" "MSH2" "NASP" "PCNA"
#> ENSG00000101868 ENSG00000077514 ENSG00000198056 ENSG00000051180 ENSG00000111247
#> "POLA1" "POLD3" "PRIM1" "RAD51" "RAD51AP1"
#> ENSG00000049541 ENSG00000117748 ENSG00000167325 ENSG00000171848 ENSG00000163950
#> "RFC2" "RPA2" "RRM1" "RRM2" "SLBP"
#> ENSG00000075131 ENSG00000176890 ENSG00000278787 ENSG00000276043 ENSG00000076248
#> "TIPIN" "TYMS" "UBR7" "UHRF1" "UNG"
#> ENSG00000162607 ENSG00000092470
#> "USP1" "WDR76"
#>
#> $Hs$cellCycle.G2M
#> ENSG00000011426 ENSG00000143401 ENSG00000087586 ENSG00000178999 ENSG00000089685
#> "ANLN" "ANP32E" "AURKA" "AURKB" "BIRC5"
#> ENSG00000169679 ENSG00000094916 ENSG00000157456 ENSG00000117399 ENSG00000158402
#> "BUB1" "CBX5" "CCNB2" "CDC20" "CDC25C"
#> ENSG00000184661 ENSG00000111665 ENSG00000134690 ENSG00000170312 ENSG00000115163
#> "CDCA2" "CDCA3" "CDCA8" "CDK1" "CENPA"
#> ENSG00000138778 ENSG00000117724 ENSG00000136108 ENSG00000169607 ENSG00000175216
#> "CENPE" "CENPF" "CKAP2" "CKAP2L" "CKAP5"
#> ENSG00000173207 ENSG00000123975 ENSG00000102974 ENSG00000126787 ENSG00000114346
#> "CKS1B" "CKS2" "CTCF" "DLGAP5" "ECT2"
#> ENSG00000092140 ENSG00000139354 ENSG00000075218 ENSG00000123485 ENSG00000164104
#> "G2E3" "GAS2L3" "GTSE1" "HJURP" "HMGB2"
#> ENSG00000072571 ENSG00000138160 ENSG00000138182 ENSG00000137807 ENSG00000142945
#> "HMMR" "KIF11" "KIF20B" "KIF23" "KIF2C"
#> ENSG00000143815 ENSG00000148773 ENSG00000010292 ENSG00000080986 ENSG00000117650
#> "LBR" "MKI67" "NCAPD2" "NDC80" "NEK2"
#> ENSG00000143228 ENSG00000137804 ENSG00000134222 ENSG00000100401 ENSG00000113810
#> "NUF2" "NUSAP1" "PSRC1" "RANGAP1" "SMC4"
#> ENSG00000013810 ENSG00000120802 ENSG00000131747 ENSG00000088325 ENSG00000112742
#> "TACC3" "TMPO" "TOP2A" "TPX2" "TTK"
#> ENSG00000188229 ENSG00000175063
#> "TUBB4B" "UBE2C"
#>
#> $Hs$Mito
#> ENSG00000198899 ENSG00000228253 ENSG00000198804 ENSG00000198712 ENSG00000198938
#> "MT-ATP6" "MT-ATP8" "MT-CO1" "MT-CO2" "MT-CO3"
#> ENSG00000198727 ENSG00000198888 ENSG00000198763 ENSG00000198840 ENSG00000198886
#> "MT-CYB" "MT-ND1" "MT-ND2" "MT-ND3" "MT-ND4"
#> ENSG00000212907 ENSG00000198786 ENSG00000198695 ENSG00000211459 ENSG00000210082
#> "MT-ND4L" "MT-ND5" "MT-ND6" "MT-RNR1" "MT-RNR2"
#> ENSG00000210127 ENSG00000210140 ENSG00000210154 ENSG00000210194 ENSG00000210049
#> "MT-TA" "MT-TC" "MT-TD" "MT-TE" "MT-TF"
#> ENSG00000210164 ENSG00000210176 ENSG00000210100 ENSG00000210156 ENSG00000209082
#> "MT-TG" "MT-TH" "MT-TI" "MT-TK" "MT-TL1"
#> ENSG00000210191 ENSG00000210112 ENSG00000210135 ENSG00000210196 ENSG00000210107
#> "MT-TL2" "MT-TM" "MT-TN" "MT-TP" "MT-TQ"
#> ENSG00000210174 ENSG00000210151 ENSG00000210184 ENSG00000210195 ENSG00000210077
#> "MT-TR" "MT-TS1" "MT-TS2" "MT-TT" "MT-TV"
#> ENSG00000210117 ENSG00000210144
#> "MT-TW" "MT-TY"
#>
#> $Hs$Ribo
#> ENSG00000169288 ENSG00000159111 ENSG00000174547 ENSG00000262814
#> "MRPL1" "MRPL10" "MRPL11" "MRPL12"
#> ENSG00000172172 ENSG00000180992 ENSG00000137547 ENSG00000259441
#> "MRPL13" "MRPL14" "MRPL15" "MRPL15P1"
#> ENSG00000166902 ENSG00000158042 ENSG00000112110 ENSG00000115364
#> "MRPL16" "MRPL17" "MRPL18" "MRPL19"
#> ENSG00000112651 ENSG00000242485 ENSG00000224870 ENSG00000272455
#> "MRPL2" "MRPL20" "MRPL20-AS1" "MRPL20-DT"
#> ENSG00000215734 ENSG00000197345 ENSG00000082515 ENSG00000250324
#> "MRPL20P1" "MRPL21" "MRPL22" "MRPL22P1"
#> ENSG00000288141 ENSG00000288320 ENSG00000143314 ENSG00000108826
#> "MRPL23" "MRPL23-AS1" "MRPL24" "MRPL27"
#> ENSG00000086504 ENSG00000257480 ENSG00000114686 ENSG00000185414
#> "MRPL28" "MRPL2P1" "MRPL3" "MRPL30"
#> ENSG00000276576 ENSG00000106591 ENSG00000220125 ENSG00000229037
#> "MRPL30P1" "MRPL32" "MRPL32P1" "MRPL32P2"
#> ENSG00000243147 ENSG00000130312 ENSG00000132313 ENSG00000220868
#> "MRPL33" "MRPL34" "MRPL35" "MRPL35P1"
#> ENSG00000232075 ENSG00000226253 ENSG00000230691 ENSG00000171421
#> "MRPL35P2" "MRPL35P3" "MRPL35P4" "MRPL36"
#> ENSG00000225392 ENSG00000116221 ENSG00000266946 ENSG00000204316
#> "MRPL36P1" "MRPL37" "MRPL37P1" "MRPL38"
#> ENSG00000154719 ENSG00000215349 ENSG00000105364 ENSG00000185608
#> "MRPL39" "MRPL3P1" "MRPL4" "MRPL40"
#> ENSG00000256037 ENSG00000182154 ENSG00000198015 ENSG00000216364
#> "MRPL40P1" "MRPL41" "MRPL42" "MRPL42P2"
#> ENSG00000219297 ENSG00000242552 ENSG00000242810 ENSG00000055950
#> "MRPL42P3" "MRPL42P4" "MRPL42P6" "MRPL43"
#> ENSG00000135900 ENSG00000277936 ENSG00000232508 ENSG00000228782
#> "MRPL44" "MRPL45" "MRPL45P1" "MRPL45P2"
#> ENSG00000259494 ENSG00000136522 ENSG00000175581 ENSG00000238076
#> "MRPL46" "MRPL47" "MRPL48" "MRPL48P1"
#> ENSG00000149792 ENSG00000224296 ENSG00000253934 ENSG00000136897
#> "MRPL49" "MRPL49P1" "MRPL49P2" "MRPL50"
#> ENSG00000234587 ENSG00000238285 ENSG00000235469 ENSG00000111639
#> "MRPL50P1" "MRPL50P2" "MRPL50P4" "MRPL51"
#> ENSG00000232777 ENSG00000172590 ENSG00000204822 ENSG00000235299
#> "MRPL51P2" "MRPL52" "MRPL53" "MRPL53P1"
#> ENSG00000183617 ENSG00000162910 ENSG00000173141 ENSG00000273698
#> "MRPL54" "MRPL55" "MRPL57" "MRPL57P1"
#> ENSG00000275940 ENSG00000249449 ENSG00000254312 ENSG00000282625
#> "MRPL57P3" "MRPL57P6" "MRPL57P7" "MRPL57P8"
#> ENSG00000167862 ENSG00000143436 ENSG00000254305 ENSG00000048544
#> "MRPL58" "MRPL9" "MRPL9P1" "MRPS10"
#> ENSG00000235378 ENSG00000234325 ENSG00000181991 ENSG00000225803
#> "MRPS10P1" "MRPS10P2" "MRPS11" "MRPS11P1"
#> ENSG00000283018 ENSG00000120333 ENSG00000116898 ENSG00000259186
#> "MRPS12" "MRPS14" "MRPS15" "MRPS15P1"
#> ENSG00000182180 ENSG00000229182 ENSG00000232925 ENSG00000280782
#> "MRPS16" "MRPS16P1" "MRPS16P2" "MRPS16P3"
#> ENSG00000239789 ENSG00000268949 ENSG00000239226 ENSG00000281841
#> "MRPS17" "MRPS17P1" "MRPS17P3" "MRPS17P5"
#> ENSG00000227814 ENSG00000096080 ENSG00000229759 ENSG00000229861
#> "MRPS17P9" "MRPS18A" "MRPS18AP1" "MRPS18B"
#> ENSG00000226013 ENSG00000235232 ENSG00000163319 ENSG00000255763
#> "MRPS18BP1" "MRPS18BP2" "MRPS18C" "MRPS18CP4"
#> ENSG00000228807 ENSG00000235916 ENSG00000122140 ENSG00000266472
#> "MRPS18CP6" "MRPS18CP7" "MRPS2" "MRPS21"
#> ENSG00000234496 ENSG00000227425 ENSG00000221879 ENSG00000226395
#> "MRPS21P1" "MRPS21P2" "MRPS21P3" "MRPS21P5"
#> ENSG00000214298 ENSG00000260024 ENSG00000259978 ENSG00000262759
#> "MRPS21P6" "MRPS21P7" "MRPS21P8" "MRPS21P9"
#> ENSG00000175110 ENSG00000271056 ENSG00000181610 ENSG00000062582
#> "MRPS22" "MRPS22P1" "MRPS23" "MRPS24"
#> ENSG00000131368 ENSG00000125901 ENSG00000113048 ENSG00000147586
#> "MRPS25" "MRPS26" "MRPS27" "MRPS28"
#> ENSG00000112996 ENSG00000251141 ENSG00000102738 ENSG00000275256
#> "MRPS30" "MRPS30-DT" "MRPS31" "MRPS31P1"
#> ENSG00000232894 ENSG00000250299 ENSG00000243406 ENSG00000090263
#> "MRPS31P2" "MRPS31P4" "MRPS31P5" "MRPS33"
#> ENSG00000249649 ENSG00000251308 ENSG00000234821 ENSG00000074071
#> "MRPS33P2" "MRPS33P3" "MRPS33P4" "MRPS34"
#> ENSG00000061794 ENSG00000250830 ENSG00000270192 ENSG00000278461
#> "MRPS35" "MRPS35P2" "MRPS35P3" "MRPS36"
#> ENSG00000236152 ENSG00000249539 ENSG00000253814 ENSG00000255231
#> "MRPS36P1" "MRPS36P2" "MRPS36P3" "MRPS36P4"
#> ENSG00000257927 ENSG00000144029 ENSG00000214743 ENSG00000266915
#> "MRPS36P5" "MRPS5" "MRPS5P3" "MRPS5P4"
#> ENSG00000243927 ENSG00000237130 ENSG00000257820 ENSG00000125445
#> "MRPS6" "MRPS6P2" "MRPS6P4" "MRPS7"
#> ENSG00000135972 ENSG00000231851 ENSG00000224509 ENSG00000147403
#> "MRPS9" "MRPS9-AS1" "MRPS9-AS2" "RPL10"
#> ENSG00000198755 ENSG00000244691 ENSG00000188873 ENSG00000215264
#> "RPL10A" "RPL10AP1" "RPL10AP2" "RPL10AP3"
#> ENSG00000235467 ENSG00000226360 ENSG00000165496 ENSG00000217026
#> "RPL10AP5" "RPL10AP6" "RPL10L" "RPL10P1"
#> ENSG00000216347 ENSG00000230853 ENSG00000234040 ENSG00000258245
#> "RPL10P10" "RPL10P11" "RPL10P12" "RPL10P13"
#> ENSG00000260031 ENSG00000267119 ENSG00000178464 ENSG00000225196
#> "RPL10P14" "RPL10P15" "RPL10P16" "RPL10P17"
#> ENSG00000253995 ENSG00000285368 ENSG00000174572 ENSG00000230734
#> "RPL10P18" "RPL10P19" "RPL10P2" "RPL10P3"
#> ENSG00000238003 ENSG00000235644 ENSG00000230076 ENSG00000242052
#> "RPL10P4" "RPL10P5" "RPL10P6" "RPL10P7"
#> ENSG00000254012 ENSG00000233913 ENSG00000142676 ENSG00000227394
#> "RPL10P8" "RPL10P9" "RPL11" "RPL11P1"
#> ENSG00000283120 ENSG00000184111 ENSG00000242137 ENSG00000197958
#> "RPL11P3" "RPL11P4" "RPL11P5" "RPL12"
#> ENSG00000232733 ENSG00000226279 ENSG00000232493 ENSG00000236992
#> "RPL12P1" "RPL12P10" "RPL12P11" "RPL12P12"
#> ENSG00000172746 ENSG00000224321 ENSG00000230993 ENSG00000204196
#> "RPL12P13" "RPL12P14" "RPL12P15" "RPL12P16"
#> ENSG00000285271 ENSG00000213400 ENSG00000226972 ENSG00000216412
#> "RPL12P17" "RPL12P18" "RPL12P19" "RPL12P2"
#> ENSG00000239627 ENSG00000242683 ENSG00000253109 ENSG00000218716
#> "RPL12P20" "RPL12P21" "RPL12P22" "RPL12P23"
#> ENSG00000243601 ENSG00000235330 ENSG00000236171 ENSG00000237169
#> "RPL12P24" "RPL12P25" "RPL12P26" "RPL12P27"
#> ENSG00000240180 ENSG00000233189 ENSG00000233106 ENSG00000242353
#> "RPL12P28" "RPL12P29" "RPL12P3" "RPL12P30"
#> ENSG00000241228 ENSG00000242314 ENSG00000244585 ENSG00000229824
#> "RPL12P31" "RPL12P32" "RPL12P33" "RPL12P34"
#> ENSG00000243007 ENSG00000242423 ENSG00000240270 ENSG00000213228
#> "RPL12P35" "RPL12P36" "RPL12P37" "RPL12P38"
#> ENSG00000237314 ENSG00000185834 ENSG00000243516 ENSG00000269637
#> "RPL12P39" "RPL12P4" "RPL12P40" "RPL12P41"
#> ENSG00000213253 ENSG00000234524 ENSG00000227123 ENSG00000233940
#> "RPL12P42" "RPL12P43" "RPL12P44" "RPL12P45"
#> ENSG00000255903 ENSG00000219222 ENSG00000270865 ENSG00000230180
#> "RPL12P46" "RPL12P47" "RPL12P48" "RPL12P49"
#> ENSG00000243855 ENSG00000270916 ENSG00000243824 ENSG00000242941
#> "RPL12P5" "RPL12P50" "RPL12P6" "RPL12P7"
#> ENSG00000219932 ENSG00000232687 ENSG00000167526 ENSG00000142541
#> "RPL12P8" "RPL12P9" "RPL13" "RPL13A"
#> ENSG00000224146 ENSG00000236047 ENSG00000231322 ENSG00000228754
#> "RPL13AP" "RPL13AP12" "RPL13AP17" "RPL13AP19"
#> ENSG00000244053 ENSG00000234498 ENSG00000242990 ENSG00000136149
#> "RPL13AP2" "RPL13AP20" "RPL13AP23" "RPL13AP25"
#> ENSG00000177350 ENSG00000236552 ENSG00000234118 ENSG00000213885
#> "RPL13AP3" "RPL13AP5" "RPL13AP6" "RPL13AP7"
#> ENSG00000273286 ENSG00000215030 ENSG00000213820 ENSG00000241890
#> "RPL13P" "RPL13P12" "RPL13P2" "RPL13P4"
#> ENSG00000240370 ENSG00000213176 ENSG00000188846 ENSG00000139239
#> "RPL13P5" "RPL13P6" "RPL14" "RPL14P1"
#> ENSG00000241923 ENSG00000225661 ENSG00000185631 ENSG00000174748
#> "RPL14P3" "RPL14P5" "RPL14P6" "RPL15"
#> ENSG00000227343 ENSG00000226428 ENSG00000226701 ENSG00000228501
#> "RPL15P1" "RPL15P13" "RPL15P14" "RPL15P18"
#> ENSG00000240914 ENSG00000282445 ENSG00000244753 ENSG00000212802
#> "RPL15P2" "RPL15P20" "RPL15P21" "RPL15P3"
#> ENSG00000233965 ENSG00000233045 ENSG00000265681 ENSG00000215472
#> "RPL15P4" "RPL15P5" "RPL17" "RPL17-C18orf32"
#> ENSG00000229500 ENSG00000224672 ENSG00000233445 ENSG00000230559
#> "RPL17P1" "RPL17P10" "RPL17P11" "RPL17P12"
#> ENSG00000223604 ENSG00000226297 ENSG00000229326 ENSG00000223409
#> "RPL17P13" "RPL17P14" "RPL17P15" "RPL17P17"
#> ENSG00000241261 ENSG00000242135 ENSG00000241250 ENSG00000243592
#> "RPL17P19" "RPL17P2" "RPL17P20" "RPL17P22"
#> ENSG00000219547 ENSG00000216854 ENSG00000271705 ENSG00000243844
#> "RPL17P25" "RPL17P26" "RPL17P3" "RPL17P33"
#> ENSG00000213432 ENSG00000233900 ENSG00000236058 ENSG00000241590
#> "RPL17P34" "RPL17P35" "RPL17P36" "RPL17P37"
#> ENSG00000281929 ENSG00000213179 ENSG00000228331 ENSG00000241088
#> "RPL17P40" "RPL17P41" "RPL17P43" "RPL17P44"
#> ENSG00000267664 ENSG00000239689 ENSG00000231211 ENSG00000213700
#> "RPL17P45" "RPL17P46" "RPL17P49" "RPL17P50"
#> ENSG00000271429 ENSG00000063177 ENSG00000105640 ENSG00000223733
#> "RPL17P51" "RPL18" "RPL18A" "RPL18AP14"
#> ENSG00000236189 ENSG00000237793 ENSG00000227952 ENSG00000225043
#> "RPL18AP15" "RPL18AP16" "RPL18AP17" "RPL18AP2"
#> ENSG00000213442 ENSG00000232439 ENSG00000218754 ENSG00000242417
#> "RPL18AP3" "RPL18AP7" "RPL18AP8" "RPL18P1"
#> ENSG00000214359 ENSG00000213307 ENSG00000244485 ENSG00000108298
#> "RPL18P10" "RPL18P11" "RPL18P13" "RPL19"
#> ENSG00000226217 ENSG00000241668 ENSG00000285195 ENSG00000240870
#> "RPL19P1" "RPL19P11" "RPL19P13" "RPL19P14"
#> ENSG00000236762 ENSG00000241654 ENSG00000229168 ENSG00000230508
#> "RPL19P16" "RPL19P18" "RPL19P20" "RPL19P21"
#> ENSG00000226915 ENSG00000230580 ENSG00000122026 ENSG00000214760
#> "RPL19P4" "RPL19P5" "RPL21" "RPL21P1"
#> ENSG00000239272 ENSG00000241423 ENSG00000242922 ENSG00000239201
#> "RPL21P10" "RPL21P103" "RPL21P104" "RPL21P106"
#> ENSG00000225239 ENSG00000232701 ENSG00000237816 ENSG00000242571
#> "RPL21P107" "RPL21P108" "RPL21P109" "RPL21P11"
#> ENSG00000226617 ENSG00000237109 ENSG00000237924 ENSG00000243711
#> "RPL21P110" "RPL21P111" "RPL21P112" "RPL21P116"
#> ENSG00000220793 ENSG00000259535 ENSG00000244582 ENSG00000283753
#> "RPL21P119" "RPL21P12" "RPL21P120" "RPL21P121"
#> ENSG00000240531 ENSG00000242320 ENSG00000243720 ENSG00000242636
#> "RPL21P123" "RPL21P126" "RPL21P127" "RPL21P129"
#> ENSG00000242837 ENSG00000232429 ENSG00000183911 ENSG00000236509
#> "RPL21P13" "RPL21P131" "RPL21P132" "RPL21P133"
#> ENSG00000233254 ENSG00000235482 ENSG00000271215 ENSG00000220842
#> "RPL21P134" "RPL21P135" "RPL21P136" "RPL21P16"
#> ENSG00000214073 ENSG00000213343 ENSG00000215063 ENSG00000236776
#> "RPL21P17" "RPL21P18" "RPL21P2" "RPL21P23"
#> ENSG00000229554 ENSG00000220749 ENSG00000225419 ENSG00000235937
#> "RPL21P24" "RPL21P28" "RPL21P3" "RPL21P30"
#> ENSG00000227187 ENSG00000224019 ENSG00000237024 ENSG00000238180
#> "RPL21P31" "RPL21P32" "RPL21P33" "RPL21P34"
#> ENSG00000231494 ENSG00000278476 ENSG00000229503 ENSG00000233934
#> "RPL21P35" "RPL21P36" "RPL21P37" "RPL21P38"
#> ENSG00000239797 ENSG00000240828 ENSG00000235670 ENSG00000214560
#> "RPL21P39" "RPL21P4" "RPL21P40" "RPL21P41"
#> ENSG00000240068 ENSG00000231688 ENSG00000229585 ENSG00000241344
#> "RPL21P42" "RPL21P43" "RPL21P44" "RPL21P47"
#> ENSG00000258640 ENSG00000228489 ENSG00000241829 ENSG00000239199
#> "RPL21P5" "RPL21P50" "RPL21P54" "RPL21P6"
#> ENSG00000216977 ENSG00000225343 ENSG00000219776 ENSG00000258613
#> "RPL21P65" "RPL21P66" "RPL21P67" "RPL21P7"
#> ENSG00000239412 ENSG00000213860 ENSG00000180662 ENSG00000238263
#> "RPL21P71" "RPL21P75" "RPL21P8" "RPL21P88"
#> ENSG00000229870 ENSG00000258618 ENSG00000227805 ENSG00000224907
#> "RPL21P89" "RPL21P9" "RPL21P90" "RPL21P91"
#> ENSG00000225922 ENSG00000229605 ENSG00000242986 ENSG00000116251
#> "RPL21P92" "RPL21P93" "RPL21P99" "RPL22"
#> ENSG00000163584 ENSG00000213178 ENSG00000213295 ENSG00000233707
#> "RPL22L1" "RPL22P1" "RPL22P10" "RPL22P11"
#> ENSG00000216867 ENSG00000242670 ENSG00000288421 ENSG00000213935
#> "RPL22P12" "RPL22P13" "RPL22P14" "RPL22P16"
#> ENSG00000235266 ENSG00000230171 ENSG00000241129 ENSG00000241081
#> "RPL22P17" "RPL22P18" "RPL22P19" "RPL22P2"
#> ENSG00000239200 ENSG00000233979 ENSG00000213653 ENSG00000232379
#> "RPL22P20" "RPL22P21" "RPL22P22" "RPL22P23"
#> ENSG00000231084 ENSG00000226457 ENSG00000225483 ENSG00000268074
#> "RPL22P24" "RPL22P3" "RPL22P4" "RPL22P5"
#> ENSG00000268993 ENSG00000234559 ENSG00000237745 ENSG00000125691
#> "RPL22P6" "RPL22P7" "RPL22P8" "RPL23"
#> ENSG00000198242 ENSG00000242511 ENSG00000240051 ENSG00000230988
#> "RPL23A" "RPL23AP1" "RPL23AP10" "RPL23AP11"
#> ENSG00000228861 ENSG00000224438 ENSG00000284795 ENSG00000228190
#> "RPL23AP12" "RPL23AP14" "RPL23AP15" "RPL23AP16"
#> ENSG00000215893 ENSG00000225338 ENSG00000229716 ENSG00000225067
#> "RPL23AP17" "RPL23AP18" "RPL23AP19" "RPL23AP2"
#> ENSG00000235990 ENSG00000237213 ENSG00000236863 ENSG00000236679
#> "RPL23AP20" "RPL23AP22" "RPL23AP23" "RPL23AP24"
#> ENSG00000233084 ENSG00000228884 ENSG00000225669 ENSG00000226331
#> "RPL23AP25" "RPL23AP26" "RPL23AP27" "RPL23AP28"
#> ENSG00000214024 ENSG00000214914 ENSG00000226658 ENSG00000232625
#> "RPL23AP29" "RPL23AP3" "RPL23AP30" "RPL23AP31"
#> ENSG00000237887 ENSG00000237824 ENSG00000225991 ENSG00000232568
#> "RPL23AP32" "RPL23AP33" "RPL23AP34" "RPL23AP35"
#> ENSG00000225124 ENSG00000236148 ENSG00000184423 ENSG00000214074
#> "RPL23AP36" "RPL23AP37" "RPL23AP38" "RPL23AP39"
#> ENSG00000212932 ENSG00000242321 ENSG00000224085 ENSG00000234851
#> "RPL23AP4" "RPL23AP40" "RPL23AP41" "RPL23AP42"
#> ENSG00000227337 ENSG00000244088 ENSG00000213285 ENSG00000213122
#> "RPL23AP43" "RPL23AP44" "RPL23AP45" "RPL23AP46"
#> ENSG00000219814 ENSG00000219135 ENSG00000243422 ENSG00000232778
#> "RPL23AP47" "RPL23AP48" "RPL23AP49" "RPL23AP50"
#> ENSG00000230370 ENSG00000223508 ENSG00000240486 ENSG00000243265
#> "RPL23AP52" "RPL23AP53" "RPL23AP54" "RPL23AP55"
#> ENSG00000244413 ENSG00000206147 ENSG00000228657 ENSG00000215002
#> "RPL23AP56" "RPL23AP57" "RPL23AP58" "RPL23AP59"
#> ENSG00000214835 ENSG00000213147 ENSG00000280012 ENSG00000213233
#> "RPL23AP6" "RPL23AP60" "RPL23AP61" "RPL23AP62"
#> ENSG00000243721 ENSG00000281913 ENSG00000243964 ENSG00000281051
#> "RPL23AP63" "RPL23AP64" "RPL23AP65" "RPL23AP66"
#> ENSG00000240991 ENSG00000242850 ENSG00000235315 ENSG00000240356
#> "RPL23AP67" "RPL23AP68" "RPL23AP69" "RPL23AP7"
#> ENSG00000241052 ENSG00000237450 ENSG00000239840 ENSG00000244283
#> "RPL23AP70" "RPL23AP71" "RPL23AP72" "RPL23AP73"
#> ENSG00000227694 ENSG00000240125 ENSG00000226156 ENSG00000267301
#> "RPL23AP74" "RPL23AP75" "RPL23AP76" "RPL23AP77"
#> ENSG00000269244 ENSG00000241582 ENSG00000213035 ENSG00000242748
#> "RPL23AP78" "RPL23AP8" "RPL23AP80" "RPL23AP81"
#> ENSG00000283658 ENSG00000234135 ENSG00000283660 ENSG00000224980
#> "RPL23AP82" "RPL23AP83" "RPL23AP84" "RPL23AP85"
#> ENSG00000262959 ENSG00000232938 ENSG00000271153 ENSG00000227875
#> "RPL23AP86" "RPL23AP87" "RPL23AP88" "RPL23AP89"
#> ENSG00000271415 ENSG00000260965 ENSG00000270723 ENSG00000232873
#> "RPL23AP90" "RPL23AP91" "RPL23AP92" "RPL23AP93"
#> ENSG00000248439 ENSG00000282063 ENSG00000250752 ENSG00000260615
#> "RPL23AP94" "RPL23AP95" "RPL23AP96" "RPL23AP97"
#> ENSG00000244708 ENSG00000226407 ENSG00000176054 ENSG00000223903
#> "RPL23P10" "RPL23P11" "RPL23P2" "RPL23P4"
#> ENSG00000230406 ENSG00000219451 ENSG00000114391 ENSG00000235065
#> "RPL23P5" "RPL23P8" "RPL24" "RPL24P2"
#> ENSG00000181524 ENSG00000215016 ENSG00000236801 ENSG00000225722
#> "RPL24P4" "RPL24P7" "RPL24P8" "RPL24P9"
#> ENSG00000161970 ENSG00000037241 ENSG00000213495 ENSG00000233829
#> "RPL26" "RPL26L1" "RPL26P13" "RPL26P15"
#> ENSG00000226221 ENSG00000219722 ENSG00000242595 ENSG00000226493
#> "RPL26P19" "RPL26P20" "RPL26P26" "RPL26P27"
#> ENSG00000223987 ENSG00000234806 ENSG00000240179 ENSG00000236264
#> "RPL26P28" "RPL26P29" "RPL26P3" "RPL26P30"
#> ENSG00000242807 ENSG00000225404 ENSG00000244229 ENSG00000225912
#> "RPL26P31" "RPL26P34" "RPL26P35" "RPL26P36"
#> ENSG00000235175 ENSG00000229659 ENSG00000226128 ENSG00000131469
#> "RPL26P37" "RPL26P6" "RPL26P9" "RPL27"
#> ENSG00000166441 ENSG00000215467 ENSG00000236667 ENSG00000233939
#> "RPL27A" "RPL27AP" "RPL27AP3" "RPL27AP4"
#> ENSG00000182383 ENSG00000229423 ENSG00000239215 ENSG00000232403
#> "RPL27AP5" "RPL27AP8" "RPL27P12" "RPL27P5"
#> ENSG00000234488 ENSG00000233741 ENSG00000283641 ENSG00000108107
#> "RPL27P6" "RPL27P7" "RPL27P8" "RPL28"
#> ENSG00000237641 ENSG00000162244 ENSG00000224858 ENSG00000224993
#> "RPL28P2" "RPL29" "RPL29P11" "RPL29P12"
#> ENSG00000241112 ENSG00000224594 ENSG00000240480 ENSG00000239924
#> "RPL29P14" "RPL29P19" "RPL29P2" "RPL29P22"
#> ENSG00000241950 ENSG00000241030 ENSG00000241286 ENSG00000232378
#> "RPL29P23" "RPL29P24" "RPL29P25" "RPL29P28"
#> ENSG00000225289 ENSG00000243730 ENSG00000235420 ENSG00000242945
#> "RPL29P29" "RPL29P3" "RPL29P30" "RPL29P32"
#> ENSG00000257074 ENSG00000213063 ENSG00000100316 ENSG00000156482
#> "RPL29P33" "RPL29P7" "RPL3" "RPL30"
#> ENSG00000225713 ENSG00000243050 ENSG00000244573 ENSG00000240631
#> "RPL30P1" "RPL30P10" "RPL30P11" "RPL30P12"
#> ENSG00000229014 ENSG00000243256 ENSG00000233357 ENSG00000230169
#> "RPL30P13" "RPL30P14" "RPL30P15" "RPL30P16"
#> ENSG00000234272 ENSG00000223640 ENSG00000237676 ENSG00000239525
#> "RPL30P2" "RPL30P3" "RPL30P4" "RPL30P5"
#> ENSG00000242936 ENSG00000244361 ENSG00000242709 ENSG00000071082
#> "RPL30P6" "RPL30P7" "RPL30P9" "RPL31"
#> ENSG00000214326 ENSG00000213075 ENSG00000284996 ENSG00000228646
#> "RPL31P1" "RPL31P11" "RPL31P12" "RPL31P13"
#> ENSG00000237930 ENSG00000232430 ENSG00000233159 ENSG00000235225
#> "RPL31P14" "RPL31P15" "RPL31P16" "RPL31P17"
#> ENSG00000230837 ENSG00000229756 ENSG00000219863 ENSG00000237929
#> "RPL31P2" "RPL31P20" "RPL31P28" "RPL31P3"
#> ENSG00000230702 ENSG00000218049 ENSG00000232612 ENSG00000253964
#> "RPL31P30" "RPL31P33" "RPL31P35" "RPL31P40"
#> ENSG00000239261 ENSG00000213657 ENSG00000233318 ENSG00000233541
#> "RPL31P41" "RPL31P44" "RPL31P45" "RPL31P47"
#> ENSG00000241680 ENSG00000231788 ENSG00000219355 ENSG00000225352
#> "RPL31P49" "RPL31P50" "RPL31P52" "RPL31P53"
#> ENSG00000229865 ENSG00000240760 ENSG00000256358 ENSG00000243053
#> "RPL31P54" "RPL31P56" "RPL31P57" "RPL31P58"
#> ENSG00000240364 ENSG00000239988 ENSG00000243297 ENSG00000236735
#> "RPL31P59" "RPL31P60" "RPL31P61" "RPL31P63"
#> ENSG00000232083 ENSG00000264054 ENSG00000144713 ENSG00000231580
#> "RPL31P7" "RPL31P9" "RPL32" "RPL32P1"
#> ENSG00000213157 ENSG00000213872 ENSG00000242209 ENSG00000241002
#> "RPL32P10" "RPL32P11" "RPL32P12" "RPL32P13"
#> ENSG00000242654 ENSG00000213461 ENSG00000219747 ENSG00000213210
#> "RPL32P14" "RPL32P15" "RPL32P16" "RPL32P17"
#> ENSG00000146677 ENSG00000226836 ENSG00000243094 ENSG00000243537
#> "RPL32P18" "RPL32P19" "RPL32P2" "RPL32P20"
#> ENSG00000125385 ENSG00000213529 ENSG00000214015 ENSG00000241020
#> "RPL32P21" "RPL32P22" "RPL32P23" "RPL32P24"
#> ENSG00000242993 ENSG00000241941 ENSG00000239617 ENSG00000232105
#> "RPL32P25" "RPL32P26" "RPL32P27" "RPL32P28"
#> ENSG00000244270 ENSG00000251474 ENSG00000241130 ENSG00000213128
#> "RPL32P29" "RPL32P3" "RPL32P30" "RPL32P31"
#> ENSG00000241157 ENSG00000243514 ENSG00000239524 ENSG00000223995
#> "RPL32P32" "RPL32P33" "RPL32P34" "RPL32P35"
#> ENSG00000189145 ENSG00000243761 ENSG00000236325 ENSG00000224064
#> "RPL32P36" "RPL32P4" "RPL32P5" "RPL32P6"
#> ENSG00000243396 ENSG00000240246 ENSG00000241143 ENSG00000109475
#> "RPL32P7" "RPL32P8" "RPL32P9" "RPL34"
#> ENSG00000234492 ENSG00000237049 ENSG00000240534 ENSG00000240509
#> "RPL34-DT" "RPL34P1" "RPL34P17" "RPL34P18"
#> ENSG00000230240 ENSG00000231508 ENSG00000244451 ENSG00000244267
#> "RPL34P19" "RPL34P20" "RPL34P21" "RPL34P22"
#> ENSG00000243669 ENSG00000223676 ENSG00000232858 ENSG00000244551
#> "RPL34P23" "RPL34P26" "RPL34P27" "RPL34P29"
#> ENSG00000223671 ENSG00000239223 ENSG00000241282 ENSG00000236312
#> "RPL34P3" "RPL34P31" "RPL34P33" "RPL34P34"
#> ENSG00000270446 ENSG00000231333 ENSG00000237583 ENSG00000136942
#> "RPL34P36" "RPL34P6" "RPL34P8" "RPL35"
#> ENSG00000182899 ENSG00000234075 ENSG00000243687 ENSG00000241103
#> "RPL35A" "RPL35AP" "RPL35AP10" "RPL35AP11"
#> ENSG00000227283 ENSG00000242602 ENSG00000240436 ENSG00000243758
#> "RPL35AP12" "RPL35AP13" "RPL35AP14" "RPL35AP15"
#> ENSG00000239602 ENSG00000239317 ENSG00000220311 ENSG00000239872
#> "RPL35AP16" "RPL35AP17" "RPL35AP18" "RPL35AP19"
#> ENSG00000227383 ENSG00000232946 ENSG00000229814 ENSG00000235133
#> "RPL35AP2" "RPL35AP20" "RPL35AP21" "RPL35AP22"
#> ENSG00000264217 ENSG00000230166 ENSG00000243607 ENSG00000244743
#> "RPL35AP23" "RPL35AP24" "RPL35AP26" "RPL35AP27"
#> ENSG00000242041 ENSG00000244540 ENSG00000230350 ENSG00000226729
#> "RPL35AP28" "RPL35AP29" "RPL35AP3" "RPL35AP30"
#> ENSG00000233460 ENSG00000243404 ENSG00000241334 ENSG00000241932
#> "RPL35AP31" "RPL35AP32" "RPL35AP33" "RPL35AP34"
#> ENSG00000239256 ENSG00000224856 ENSG00000236929 ENSG00000226538
#> "RPL35AP35" "RPL35AP36" "RPL35AP37" "RPL35AP4"
#> ENSG00000223505 ENSG00000228879 ENSG00000225487 ENSG00000235787
#> "RPL35AP5" "RPL35AP6" "RPL35AP7" "RPL35AP8"
#> ENSG00000243675 ENSG00000237991 ENSG00000220583 ENSG00000219902
#> "RPL35AP9" "RPL35P1" "RPL35P2" "RPL35P3"
#> ENSG00000213783 ENSG00000225573 ENSG00000244018 ENSG00000226142
#> "RPL35P4" "RPL35P5" "RPL35P6" "RPL35P8"
#> ENSG00000174418 ENSG00000130255 ENSG00000241343 ENSG00000257529
#> "RPL35P9" "RPL36" "RPL36A" "RPL36A-HNRNPH2"
#> ENSG00000165502 ENSG00000237959 ENSG00000233747 ENSG00000233335
#> "RPL36AL" "RPL36AP10" "RPL36AP13" "RPL36AP14"
#> ENSG00000235369 ENSG00000232228 ENSG00000240785 ENSG00000235828
#> "RPL36AP15" "RPL36AP16" "RPL36AP21" "RPL36AP26"
#> ENSG00000224683 ENSG00000235619 ENSG00000231810 ENSG00000237540
#> "RPL36AP29" "RPL36AP33" "RPL36AP35" "RPL36AP36"
#> ENSG00000230980 ENSG00000240298 ENSG00000242087 ENSG00000241362
#> "RPL36AP39" "RPL36AP40" "RPL36AP41" "RPL36AP43"
#> ENSG00000240366 ENSG00000213180 ENSG00000242291 ENSG00000214925
#> "RPL36AP45" "RPL36AP48" "RPL36AP51" "RPL36AP52"
#> ENSG00000224664 ENSG00000226107 ENSG00000226016 ENSG00000231293
#> "RPL36AP53" "RPL36AP54" "RPL36AP55" "RPL36AP6"
#> ENSG00000230636 ENSG00000224476 ENSG00000235656 ENSG00000232540
#> "RPL36P1" "RPL36P16" "RPL36P18" "RPL36P19"
#> ENSG00000231302 ENSG00000234270 ENSG00000224497 ENSG00000145592
#> "RPL36P2" "RPL36P20" "RPL36P4" "RPL37"
#> ENSG00000197756 ENSG00000232485 ENSG00000226243 ENSG00000176343
#> "RPL37A" "RPL37A-DT" "RPL37AP1" "RPL37AP8"
#> ENSG00000227401 ENSG00000224627 ENSG00000225024 ENSG00000237916
#> "RPL37P1" "RPL37P10" "RPL37P11" "RPL37P12"
#> ENSG00000233702 ENSG00000216365 ENSG00000229235 ENSG00000239559
#> "RPL37P13" "RPL37P15" "RPL37P18" "RPL37P2"
#> ENSG00000236433 ENSG00000243680 ENSG00000224949 ENSG00000251597
#> "RPL37P21" "RPL37P23" "RPL37P24" "RPL37P25"
#> ENSG00000215369 ENSG00000230198 ENSG00000241431 ENSG00000172809
#> "RPL37P3" "RPL37P4" "RPL37P6" "RPL38"
#> ENSG00000241993 ENSG00000237077 ENSG00000244422 ENSG00000250562
#> "RPL38P1" "RPL38P2" "RPL38P3" "RPL38P4"
#> ENSG00000235579 ENSG00000224291 ENSG00000198918 ENSG00000163923
#> "RPL38P5" "RPL38P6" "RPL39" "RPL39L"
#> ENSG00000228601 ENSG00000224463 ENSG00000231414 ENSG00000227470
#> "RPL39P" "RPL39P14" "RPL39P15" "RPL39P16"
#> ENSG00000229468 ENSG00000227271 ENSG00000240454 ENSG00000244432
#> "RPL39P18" "RPL39P25" "RPL39P26" "RPL39P28"
#> ENSG00000236860 ENSG00000235174 ENSG00000242176 ENSG00000243058
#> "RPL39P29" "RPL39P3" "RPL39P31" "RPL39P33"
#> ENSG00000242255 ENSG00000239912 ENSG00000241464 ENSG00000231005
#> "RPL39P34" "RPL39P36" "RPL39P38" "RPL39P39"
#> ENSG00000226580 ENSG00000214289 ENSG00000238173 ENSG00000140986
#> "RPL39P40" "RPL39P5" "RPL39P6" "RPL3L"
#> ENSG00000228149 ENSG00000282698 ENSG00000223568 ENSG00000232496
#> "RPL3P1" "RPL3P10" "RPL3P11" "RPL3P12"
#> ENSG00000258013 ENSG00000227672 ENSG00000243388 ENSG00000232573
#> "RPL3P13" "RPL3P2" "RPL3P3" "RPL3P4"
#> ENSG00000231546 ENSG00000213891 ENSG00000225093 ENSG00000232199
#> "RPL3P5" "RPL3P6" "RPL3P7" "RPL3P8"
#> ENSG00000240540 ENSG00000174444 ENSG00000229117 ENSG00000227063
#> "RPL3P9" "RPL4" "RPL41" "RPL41P1"
#> ENSG00000282105 ENSG00000256393 ENSG00000240954 ENSG00000232341
#> "RPL41P2" "RPL41P5" "RPL4P1" "RPL4P2"
#> ENSG00000230364 ENSG00000229638 ENSG00000263127 ENSG00000230071
#> "RPL4P3" "RPL4P4" "RPL4P5" "RPL4P6"
#> ENSG00000224442 ENSG00000122406 ENSG00000241061 ENSG00000234067
#> "RPL4P7" "RPL5" "RPL5P1" "RPL5P10"
#> ENSG00000242882 ENSG00000242697 ENSG00000242134 ENSG00000243914
#> "RPL5P11" "RPL5P12" "RPL5P13" "RPL5P14"
#> ENSG00000240412 ENSG00000240411 ENSG00000243859 ENSG00000220744
#> "RPL5P15" "RPL5P16" "RPL5P17" "RPL5P18"
#> ENSG00000220553 ENSG00000237068 ENSG00000218643 ENSG00000218689
#> "RPL5P19" "RPL5P2" "RPL5P20" "RPL5P21"
#> ENSG00000239198 ENSG00000240395 ENSG00000244052 ENSG00000225251
#> "RPL5P22" "RPL5P23" "RPL5P24" "RPL5P25"
#> ENSG00000230469 ENSG00000228195 ENSG00000235264 ENSG00000281820
#> "RPL5P26" "RPL5P27" "RPL5P28" "RPL5P29"
#> ENSG00000242276 ENSG00000243431 ENSG00000214878 ENSG00000282545
#> "RPL5P3" "RPL5P30" "RPL5P31" "RPL5P32"
#> ENSG00000243521 ENSG00000234009 ENSG00000214727 ENSG00000229994
#> "RPL5P33" "RPL5P34" "RPL5P35" "RPL5P4"
#> ENSG00000213051 ENSG00000232393 ENSG00000234415 ENSG00000213917
#> "RPL5P5" "RPL5P6" "RPL5P7" "RPL5P8"
#> ENSG00000236330 ENSG00000089009 ENSG00000214671 ENSG00000227056
#> "RPL5P9" "RPL6" "RPL6P12" "RPL6P2"
#> ENSG00000223445 ENSG00000227474 ENSG00000213270 ENSG00000235552
#> "RPL6P21" "RPL6P24" "RPL6P25" "RPL6P27"
#> ENSG00000236243 ENSG00000215313 ENSG00000226080 ENSG00000214064
#> "RPL6P29" "RPL6P30" "RPL6P4" "RPL6P5"
#> ENSG00000231063 ENSG00000239212 ENSG00000242285 ENSG00000242390
#> "RPL6P6" "RPL6P7" "RPL6P8" "RPL6P9"
#> ENSG00000147604 ENSG00000280858 ENSG00000240522 ENSG00000242445
#> "RPL7" "RPL7A" "RPL7AP10" "RPL7AP11"
#> ENSG00000213979 ENSG00000236806 ENSG00000241984 ENSG00000227331
#> "RPL7AP14" "RPL7AP15" "RPL7AP2" "RPL7AP22"
#> ENSG00000241367 ENSG00000235294 ENSG00000214988 ENSG00000184139
#> "RPL7AP23" "RPL7AP25" "RPL7AP26" "RPL7AP28"
#> ENSG00000256243 ENSG00000241741 ENSG00000242083 ENSG00000254200
#> "RPL7AP3" "RPL7AP30" "RPL7AP31" "RPL7AP33"
#> ENSG00000213312 ENSG00000213787 ENSG00000213641 ENSG00000184961
#> "RPL7AP34" "RPL7AP38" "RPL7AP4" "RPL7AP49"
#> ENSG00000213609 ENSG00000226448 ENSG00000225354 ENSG00000235962
#> "RPL7AP50" "RPL7AP51" "RPL7AP52" "RPL7AP53"
#> ENSG00000242834 ENSG00000242248 ENSG00000240554 ENSG00000242071
#> "RPL7AP56" "RPL7AP57" "RPL7AP58" "RPL7AP6"
#> ENSG00000213152 ENSG00000233291 ENSG00000213876 ENSG00000284212
#> "RPL7AP60" "RPL7AP61" "RPL7AP64" "RPL7AP65"
#> ENSG00000175886 ENSG00000268483 ENSG00000227326 ENSG00000234566
#> "RPL7AP66" "RPL7AP69" "RPL7AP7" "RPL7AP71"
#> ENSG00000235735 ENSG00000237952 ENSG00000230507 ENSG00000213272
#> "RPL7AP72" "RPL7AP73" "RPL7AP8" "RPL7AP9"
#> ENSG00000146223 ENSG00000234227 ENSG00000237322 ENSG00000176970
#> "RPL7L1" "RPL7L1P1" "RPL7L1P10" "RPL7L1P11"
#> ENSG00000231981 ENSG00000251464 ENSG00000231490 ENSG00000235090
#> "RPL7L1P12" "RPL7L1P13" "RPL7L1P2" "RPL7L1P3"
#> ENSG00000249582 ENSG00000267634 ENSG00000251137 ENSG00000228766
#> "RPL7L1P4" "RPL7L1P5" "RPL7L1P7" "RPL7L1P8"
#> ENSG00000231035 ENSG00000214485 ENSG00000229752 ENSG00000234619
#> "RPL7L1P9" "RPL7P1" "RPL7P10" "RPL7P11"
#> ENSG00000227770 ENSG00000234253 ENSG00000232994 ENSG00000240622
#> "RPL7P12" "RPL7P13" "RPL7P14" "RPL7P15"
#> ENSG00000242899 ENSG00000214062 ENSG00000243806 ENSG00000241458
#> "RPL7P16" "RPL7P17" "RPL7P18" "RPL7P19"
#> ENSG00000227663 ENSG00000254252 ENSG00000231579 ENSG00000226544
#> "RPL7P2" "RPL7P20" "RPL7P21" "RPL7P22"
#> ENSG00000244363 ENSG00000240003 ENSG00000216636 ENSG00000184612
#> "RPL7P23" "RPL7P24" "RPL7P25" "RPL7P26"
#> ENSG00000220069 ENSG00000218632 ENSG00000214457 ENSG00000226094
#> "RPL7P27" "RPL7P28" "RPL7P29" "RPL7P3"
#> ENSG00000227982 ENSG00000235379 ENSG00000231006 ENSG00000215236
#> "RPL7P30" "RPL7P31" "RPL7P32" "RPL7P33"
#> ENSG00000237205 ENSG00000233518 ENSG00000234109 ENSG00000226646
#> "RPL7P34" "RPL7P35" "RPL7P36" "RPL7P37"
#> ENSG00000239473 ENSG00000243020 ENSG00000236100 ENSG00000242991
#> "RPL7P38" "RPL7P39" "RPL7P4" "RPL7P40"
#> ENSG00000241146 ENSG00000241825 ENSG00000241045 ENSG00000233873
#> "RPL7P41" "RPL7P42" "RPL7P43" "RPL7P44"
#> ENSG00000225823 ENSG00000229917 ENSG00000228071 ENSG00000187504
#> "RPL7P45" "RPL7P46" "RPL7P47" "RPL7P48"
#> ENSG00000242931 ENSG00000241562 ENSG00000268785 ENSG00000243469
#> "RPL7P49" "RPL7P5" "RPL7P50" "RPL7P51"
#> ENSG00000228599 ENSG00000237475 ENSG00000227645 ENSG00000228301
#> "RPL7P52" "RPL7P53" "RPL7P54" "RPL7P55"
#> ENSG00000231164 ENSG00000224401 ENSG00000216938 ENSG00000225918
#> "RPL7P56" "RPL7P57" "RPL7P58" "RPL7P59"
#> ENSG00000227525 ENSG00000214142 ENSG00000230282 ENSG00000224315
#> "RPL7P6" "RPL7P60" "RPL7P61" "RPL7P7"
#> ENSG00000235045 ENSG00000137970 ENSG00000161016 ENSG00000216676
#> "RPL7P8" "RPL7P9" "RPL8" "RPL8P1"
#> ENSG00000225267 ENSG00000163682 ENSG00000228374 ENSG00000285055
#> "RPL8P2" "RPL9" "RPL9P13" "RPL9P14"
#> ENSG00000240601 ENSG00000214676 ENSG00000213309 ENSG00000234324
#> "RPL9P15" "RPL9P16" "RPL9P18" "RPL9P2"
#> ENSG00000214089 ENSG00000240821 ENSG00000242067 ENSG00000267355
#> "RPL9P21" "RPL9P25" "RPL9P28" "RPL9P29"
#> ENSG00000240392 ENSG00000240074 ENSG00000239659 ENSG00000242100
#> "RPL9P3" "RPL9P30" "RPL9P31" "RPL9P32"
#> ENSG00000244071 ENSG00000239510 ENSG00000241891 ENSG00000238103
#> "RPL9P33" "RPL9P5" "RPL9P6" "RPL9P7"
#> ENSG00000089157 ENSG00000226229 ENSG00000239780 ENSG00000243742
#> "RPLP0" "RPLP0P1" "RPLP0P11" "RPLP0P2"
#> ENSG00000213553 ENSG00000238069 ENSG00000137818 ENSG00000226888
#> "RPLP0P6" "RPLP0P7" "RPLP1" "RPLP1P10"
#> ENSG00000243686 ENSG00000232163 ENSG00000214657 ENSG00000213433
#> "RPLP1P11" "RPLP1P13" "RPLP1P5" "RPLP1P6"
#> ENSG00000177600 ENSG00000214374 ENSG00000124614 ENSG00000270800
#> "RPLP2" "RPLP2P1" "RPS10" "RPS10-NUDT3"
#> ENSG00000213744 ENSG00000239917 ENSG00000229455 ENSG00000213950
#> "RPS10P14" "RPS10P16" "RPS10P18" "RPS10P2"
#> ENSG00000240443 ENSG00000232881 ENSG00000267752 ENSG00000243167
#> "RPS10P20" "RPS10P21" "RPS10P27" "RPS10P28"
#> ENSG00000217716 ENSG00000101278 ENSG00000223396 ENSG00000227791
#> "RPS10P3" "RPS10P5" "RPS10P7" "RPS10P9"
#> ENSG00000142534 ENSG00000235544 ENSG00000232888 ENSG00000214047
#> "RPS11" "RPS11P1" "RPS11P5" "RPS11P7"
#> ENSG00000112306 ENSG00000225147 ENSG00000240724 ENSG00000215184
#> "RPS12" "RPS12P10" "RPS12P15" "RPS12P16"
#> ENSG00000233163 ENSG00000232965 ENSG00000234319 ENSG00000244134
#> "RPS12P17" "RPS12P18" "RPS12P2" "RPS12P20"
#> ENSG00000243930 ENSG00000180172 ENSG00000230283 ENSG00000225193
#> "RPS12P21" "RPS12P23" "RPS12P24" "RPS12P26"
#> ENSG00000240435 ENSG00000240494 ENSG00000232713 ENSG00000242325
#> "RPS12P27" "RPS12P28" "RPS12P3" "RPS12P31"
#> ENSG00000236533 ENSG00000226216 ENSG00000110700 ENSG00000228929
#> "RPS12P4" "RPS12P5" "RPS13" "RPS13P2"
#> ENSG00000236913 ENSG00000238111 ENSG00000237953 ENSG00000164587
#> "RPS13P3" "RPS13P4" "RPS13P5" "RPS14"
#> ENSG00000226928 ENSG00000225933 ENSG00000242635 ENSG00000239528
#> "RPS14P4" "RPS14P5" "RPS14P7" "RPS14P8"
#> ENSG00000115268 ENSG00000134419 ENSG00000214535 ENSG00000225447
#> "RPS15" "RPS15A" "RPS15AP1" "RPS15AP10"
#> ENSG00000234093 ENSG00000232134 ENSG00000228568 ENSG00000233131
#> "RPS15AP11" "RPS15AP12" "RPS15AP13" "RPS15AP14"
#> ENSG00000223739 ENSG00000239483 ENSG00000225405 ENSG00000242979
#> "RPS15AP15" "RPS15AP16" "RPS15AP17" "RPS15AP18"
#> ENSG00000241511 ENSG00000236191 ENSG00000236783 ENSG00000229197
#> "RPS15AP24" "RPS15AP25" "RPS15AP27" "RPS15AP28"
#> ENSG00000237827 ENSG00000214903 ENSG00000227560 ENSG00000242461
#> "RPS15AP29" "RPS15AP3" "RPS15AP30" "RPS15AP32"
#> ENSG00000241808 ENSG00000213013 ENSG00000237668 ENSG00000229822
#> "RPS15AP34" "RPS15AP36" "RPS15AP38" "RPS15AP39"
#> ENSG00000233921 ENSG00000223540 ENSG00000233072 ENSG00000234088
#> "RPS15AP40" "RPS15AP5" "RPS15AP6" "RPS15AP7"
#> ENSG00000228453 ENSG00000233762 ENSG00000229806 ENSG00000240846
#> "RPS15AP9" "RPS15P4" "RPS15P5" "RPS15P9"
#> ENSG00000105193 ENSG00000213729 ENSG00000233329 ENSG00000217527
#> "RPS16" "RPS16P2" "RPS16P3" "RPS16P5"
#> ENSG00000213664 ENSG00000242675 ENSG00000278229 ENSG00000228840
#> "RPS16P8" "RPS16P9" "RPS17" "RPS17P1"
#> ENSG00000244621 ENSG00000224706 ENSG00000243287 ENSG00000239354
#> "RPS17P11" "RPS17P13" "RPS17P14" "RPS17P15"
#> ENSG00000225758 ENSG00000197575 ENSG00000060303 ENSG00000232723
#> "RPS17P17" "RPS17P2" "RPS17P5" "RPS17P7"
#> ENSG00000226242 ENSG00000227794 ENSG00000225831 ENSG00000230897
#> "RPS17P8" "RPS18" "RPS18P1" "RPS18P12"
#> ENSG00000243455 ENSG00000244048 ENSG00000220848 ENSG00000105372
#> "RPS18P13" "RPS18P6" "RPS18P9" "RPS19"
#> ENSG00000187051 ENSG00000214612 ENSG00000240463 ENSG00000234637
#> "RPS19BP1" "RPS19P1" "RPS19P3" "RPS19P6"
#> ENSG00000228462 ENSG00000140988 ENSG00000008988 ENSG00000229761
#> "RPS19P7" "RPS2" "RPS20" "RPS20P1"
#> ENSG00000233971 ENSG00000237784 ENSG00000228848 ENSG00000223803
#> "RPS20P10" "RPS20P12" "RPS20P13" "RPS20P14"
#> ENSG00000227523 ENSG00000219274 ENSG00000241942 ENSG00000244295
#> "RPS20P15" "RPS20P2" "RPS20P20" "RPS20P21"
#> ENSG00000239218 ENSG00000242399 ENSG00000236862 ENSG00000228375
#> "RPS20P22" "RPS20P23" "RPS20P24" "RPS20P25"
#> ENSG00000240925 ENSG00000218198 ENSG00000242085 ENSG00000241907
#> "RPS20P31" "RPS20P32" "RPS20P33" "RPS20P4"
#> ENSG00000236888 ENSG00000237162 ENSG00000171858 ENSG00000282862
#> "RPS20P5" "RPS20P9" "RPS21" "RPS21P1"
#> ENSG00000230353 ENSG00000242358 ENSG00000223782 ENSG00000186468
#> "RPS21P2" "RPS21P4" "RPS21P8" "RPS23"
#> ENSG00000243504 ENSG00000224203 ENSG00000213448 ENSG00000244099
#> "RPS23P1" "RPS23P10" "RPS23P2" "RPS23P3"
#> ENSG00000240992 ENSG00000242608 ENSG00000241641 ENSG00000239527
#> "RPS23P4" "RPS23P5" "RPS23P6" "RPS23P7"
#> ENSG00000230629 ENSG00000231586 ENSG00000138326 ENSG00000236477
#> "RPS23P8" "RPS23P9" "RPS24" "RPS24P1"
#> ENSG00000220237 ENSG00000233190 ENSG00000223688 ENSG00000242634
#> "RPS24P12" "RPS24P13" "RPS24P14" "RPS24P16"
#> ENSG00000243988 ENSG00000243925 ENSG00000227008 ENSG00000230249
#> "RPS24P17" "RPS24P18" "RPS24P19" "RPS24P21"
#> ENSG00000233158 ENSG00000227361 ENSG00000224094 ENSG00000280831
#> "RPS24P6" "RPS24P7" "RPS24P8" "RPS25"
#> ENSG00000233416 ENSG00000232142 ENSG00000197728 ENSG00000196933
#> "RPS25P3" "RPS25P9" "RPS26" "RPS26P11"
#> ENSG00000227887 ENSG00000223416 ENSG00000229087 ENSG00000244563
#> "RPS26P13" "RPS26P15" "RPS26P18" "RPS26P19"
#> ENSG00000233278 ENSG00000224553 ENSG00000242829 ENSG00000243920
#> "RPS26P2" "RPS26P20" "RPS26P21" "RPS26P24"
#> ENSG00000243538 ENSG00000282942 ENSG00000234839 ENSG00000235459
#> "RPS26P28" "RPS26P3" "RPS26P30" "RPS26P31"
#> ENSG00000240427 ENSG00000242206 ENSG00000234192 ENSG00000227586
#> "RPS26P34" "RPS26P35" "RPS26P38" "RPS26P39"
#> ENSG00000228349 ENSG00000231366 ENSG00000237139 ENSG00000232437
#> "RPS26P4" "RPS26P40" "RPS26P41" "RPS26P42"
#> ENSG00000244641 ENSG00000241765 ENSG00000234354 ENSG00000239438
#> "RPS26P43" "RPS26P45" "RPS26P47" "RPS26P48"
#> ENSG00000239365 ENSG00000224602 ENSG00000242307 ENSG00000224161
#> "RPS26P49" "RPS26P5" "RPS26P52" "RPS26P54"
#> ENSG00000239210 ENSG00000226339 ENSG00000236880 ENSG00000225071
#> "RPS26P55" "RPS26P56" "RPS26P57" "RPS26P58"
#> ENSG00000212994 ENSG00000282238 ENSG00000177954 ENSG00000143947
#> "RPS26P6" "RPS26P8" "RPS27" "RPS27A"
#> ENSG00000242692 ENSG00000240974 ENSG00000218208 ENSG00000225224
#> "RPS27AP1" "RPS27AP10" "RPS27AP11" "RPS27AP12"
#> ENSG00000244159 ENSG00000236594 ENSG00000229753 ENSG00000224631
#> "RPS27AP13" "RPS27AP14" "RPS27AP15" "RPS27AP16"
#> ENSG00000237490 ENSG00000249851 ENSG00000269228 ENSG00000232333
#> "RPS27AP17" "RPS27AP18" "RPS27AP19" "RPS27AP2"
#> ENSG00000182888 ENSG00000226144 ENSG00000231767 ENSG00000224800
#> "RPS27AP20" "RPS27AP3" "RPS27AP5" "RPS27AP6"
#> ENSG00000236549 ENSG00000237483 ENSG00000242706 ENSG00000185088
#> "RPS27AP7" "RPS27AP8" "RPS27AP9" "RPS27L"
#> ENSG00000223876 ENSG00000231017 ENSG00000241673 ENSG00000274567
#> "RPS27P1" "RPS27P10" "RPS27P12" "RPS27P14"
#> ENSG00000218459 ENSG00000225907 ENSG00000233135 ENSG00000240121
#> "RPS27P15" "RPS27P16" "RPS27P18" "RPS27P20"
#> ENSG00000240759 ENSG00000241451 ENSG00000239413 ENSG00000239881
#> "RPS27P21" "RPS27P22" "RPS27P23" "RPS27P25"
#> ENSG00000240043 ENSG00000244043 ENSG00000240231 ENSG00000238183
#> "RPS27P26" "RPS27P27" "RPS27P29" "RPS27P5"
#> ENSG00000233927 ENSG00000285273 ENSG00000237039 ENSG00000224646
#> "RPS28" "RPS28P1" "RPS28P4" "RPS28P5"
#> ENSG00000227097 ENSG00000226093 ENSG00000213741 ENSG00000242293
#> "RPS28P7" "RPS28P8" "RPS29" "RPS29P1"
#> ENSG00000226884 ENSG00000242640 ENSG00000243664 ENSG00000217089
#> "RPS29P10" "RPS29P11" "RPS29P12" "RPS29P13"
#> ENSG00000229054 ENSG00000235926 ENSG00000235354 ENSG00000227852
#> "RPS29P14" "RPS29P15" "RPS29P16" "RPS29P17"
#> ENSG00000243353 ENSG00000239281 ENSG00000240385 ENSG00000241913
#> "RPS29P19" "RPS29P2" "RPS29P20" "RPS29P21"
#> ENSG00000240873 ENSG00000231361 ENSG00000244253 ENSG00000243581
#> "RPS29P22" "RPS29P23" "RPS29P24" "RPS29P25"
#> ENSG00000239320 ENSG00000240320 ENSG00000232069 ENSG00000233717
#> "RPS29P26" "RPS29P27" "RPS29P28" "RPS29P29"
#> ENSG00000225770 ENSG00000268243 ENSG00000224279 ENSG00000276703
#> "RPS29P3" "RPS29P30" "RPS29P31" "RPS29P32"
#> ENSG00000226470 ENSG00000233946 ENSG00000230777 ENSG00000230451
#> "RPS29P33" "RPS29P4" "RPS29P5" "RPS29P6"
#> ENSG00000231622 ENSG00000232238 ENSG00000223433 ENSG00000225246
#> "RPS29P7" "RPS29P8" "RPS29P9" "RPS2P1"
#> ENSG00000235440 ENSG00000230799 ENSG00000213399 ENSG00000231735
#> "RPS2P15" "RPS2P16" "RPS2P17" "RPS2P18"
#> ENSG00000177776 ENSG00000244019 ENSG00000241965 ENSG00000179157
#> "RPS2P2" "RPS2P24" "RPS2P25" "RPS2P28"
#> ENSG00000232818 ENSG00000238172 ENSG00000227032 ENSG00000240698
#> "RPS2P32" "RPS2P35" "RPS2P36" "RPS2P39"
#> ENSG00000196183 ENSG00000244060 ENSG00000243609 ENSG00000244378
#> "RPS2P4" "RPS2P41" "RPS2P44" "RPS2P45"
#> ENSG00000189343 ENSG00000233380 ENSG00000240342 ENSG00000213726
#> "RPS2P46" "RPS2P48" "RPS2P5" "RPS2P52"
#> ENSG00000216866 ENSG00000285060 ENSG00000235508 ENSG00000149273
#> "RPS2P55" "RPS2P6" "RPS2P7" "RPS3"
#> ENSG00000145425 ENSG00000233206 ENSG00000226292 ENSG00000230116
#> "RPS3A" "RPS3AP1" "RPS3AP10" "RPS3AP11"
#> ENSG00000236804 ENSG00000230783 ENSG00000242229 ENSG00000288476
#> "RPS3AP12" "RPS3AP13" "RPS3AP14" "RPS3AP15"
#> ENSG00000243894 ENSG00000244031 ENSG00000243417 ENSG00000244004
#> "RPS3AP16" "RPS3AP17" "RPS3AP18" "RPS3AP19"
#> ENSG00000219027 ENSG00000213757 ENSG00000214784 ENSG00000240083
#> "RPS3AP2" "RPS3AP20" "RPS3AP21" "RPS3AP22"
#> ENSG00000218351 ENSG00000217684 ENSG00000232385 ENSG00000214389
#> "RPS3AP23" "RPS3AP24" "RPS3AP25" "RPS3AP26"
#> ENSG00000226205 ENSG00000234995 ENSG00000237818 ENSG00000231241
#> "RPS3AP27" "RPS3AP28" "RPS3AP29" "RPS3AP3"
#> ENSG00000285129 ENSG00000244427 ENSG00000240047 ENSG00000285381
#> "RPS3AP30" "RPS3AP31" "RPS3AP32" "RPS3AP33"
#> ENSG00000284920 ENSG00000284751 ENSG00000214362 ENSG00000227583
#> "RPS3AP34" "RPS3AP35" "RPS3AP36" "RPS3AP37"
#> ENSG00000226318 ENSG00000237226 ENSG00000259105 ENSG00000243672
#> "RPS3AP38" "RPS3AP39" "RPS3AP4" "RPS3AP40"
#> ENSG00000239481 ENSG00000244244 ENSG00000242661 ENSG00000234031
#> "RPS3AP41" "RPS3AP42" "RPS3AP43" "RPS3AP44"
#> ENSG00000226132 ENSG00000205871 ENSG00000242278 ENSG00000242060
#> "RPS3AP46" "RPS3AP47" "RPS3AP48" "RPS3AP49"
#> ENSG00000178429 ENSG00000243864 ENSG00000225971 ENSG00000230405
#> "RPS3AP5" "RPS3AP50" "RPS3AP51" "RPS3AP52"
#> ENSG00000227578 ENSG00000229057 ENSG00000234797 ENSG00000229965
#> "RPS3AP53" "RPS3AP54" "RPS3AP6" "RPS3AP7"
#> ENSG00000233562 ENSG00000231022 ENSG00000230935 ENSG00000231307
#> "RPS3AP8" "RPS3AP9" "RPS3P1" "RPS3P2"
#> ENSG00000213363 ENSG00000243101 ENSG00000198034 ENSG00000214203
#> "RPS3P6" "RPS3P7" "RPS4X" "RPS4XP1"
#> ENSG00000244217 ENSG00000234335 ENSG00000244400 ENSG00000240371
#> "RPS4XP10" "RPS4XP11" "RPS4XP12" "RPS4XP13"
#> ENSG00000284817 ENSG00000240721 ENSG00000224892 ENSG00000284153
#> "RPS4XP14" "RPS4XP15" "RPS4XP16" "RPS4XP17"
#> ENSG00000239490 ENSG00000242058 ENSG00000226948 ENSG00000249987
#> "RPS4XP18" "RPS4XP19" "RPS4XP2" "RPS4XP20"
#> ENSG00000186008 ENSG00000239830 ENSG00000239253 ENSG00000214541
#> "RPS4XP21" "RPS4XP22" "RPS4XP23" "RPS4XP3"
#> ENSG00000215520 ENSG00000229920 ENSG00000244073 ENSG00000218265
#> "RPS4XP4" "RPS4XP5" "RPS4XP6" "RPS4XP7"
#> ENSG00000219146 ENSG00000217404 ENSG00000129824 ENSG00000280969
#> "RPS4XP8" "RPS4XP9" "RPS4Y1" "RPS4Y2"
#> ENSG00000083845 ENSG00000224598 ENSG00000262148 ENSG00000225381
#> "RPS5" "RPS5P2" "RPS5P3" "RPS5P7"
#> ENSG00000237730 ENSG00000137154 ENSG00000281877 ENSG00000071242
#> "RPS5P8" "RPS6" "RPS6KA1" "RPS6KA2"
#> ENSG00000231654 ENSG00000232082 ENSG00000177189 ENSG00000162302
#> "RPS6KA2-AS1" "RPS6KA2-IT1" "RPS6KA3" "RPS6KA4"
#> ENSG00000100784 ENSG00000072133 ENSG00000108443 ENSG00000175634
#> "RPS6KA5" "RPS6KA6" "RPS6KB1" "RPS6KB2"
#> ENSG00000255949 ENSG00000136643 ENSG00000198208 ENSG00000233309
#> "RPS6KB2-AS1" "RPS6KC1" "RPS6KL1" "RPS6P12"
#> ENSG00000225482 ENSG00000230809 ENSG00000243250 ENSG00000231541
#> "RPS6P14" "RPS6P15" "RPS6P16" "RPS6P2"
#> ENSG00000226356 ENSG00000243499 ENSG00000262159 ENSG00000230871
#> "RPS6P20" "RPS6P21" "RPS6P22" "RPS6P23"
#> ENSG00000240616 ENSG00000213269 ENSG00000237549 ENSG00000244571
#> "RPS6P25" "RPS6P26" "RPS6P3" "RPS6P4"
#> ENSG00000219253 ENSG00000224221 ENSG00000171863 ENSG00000263266
#> "RPS6P7" "RPS6P8" "RPS7" "RPS7P1"
#> ENSG00000226525 ENSG00000282052 ENSG00000237432 ENSG00000235425
#> "RPS7P10" "RPS7P11" "RPS7P12" "RPS7P13"
#> ENSG00000213695 ENSG00000237170 ENSG00000231837 ENSG00000231940
#> "RPS7P14" "RPS7P15" "RPS7P2" "RPS7P3"
#> ENSG00000229133 ENSG00000217327 ENSG00000215278 ENSG00000240167
#> "RPS7P4" "RPS7P5" "RPS7P6" "RPS7P7"
#> ENSG00000213183 ENSG00000233353 ENSG00000142937 ENSG00000223877
#> "RPS7P8" "RPS7P9" "RPS8" "RPS8P10"
#> ENSG00000215457 ENSG00000227437 ENSG00000231660 ENSG00000274626
#> "RPS8P3" "RPS8P4" "RPS8P6" "RPS9"
#> ENSG00000214889 ENSG00000168028 ENSG00000228820 ENSG00000224439
#> "RPS9P1" "RPSA" "RPSAP1" "RPSAP10"
#> ENSG00000237433 ENSG00000240087 ENSG00000233924 ENSG00000233984
#> "RPSAP11" "RPSAP12" "RPSAP13" "RPSAP14"
#> ENSG00000237506 ENSG00000235145 ENSG00000226855 ENSG00000224261
#> "RPSAP15" "RPSAP16" "RPSAP17" "RPSAP18"
#> ENSG00000183298 ENSG00000249814 ENSG00000229871 ENSG00000226498
#> "RPSAP19" "RPSAP2" "RPSAP20" "RPSAP21"
#> ENSG00000229648 ENSG00000230391 ENSG00000235414 ENSG00000230384
#> "RPSAP22" "RPSAP23" "RPSAP24" "RPSAP25"
#> ENSG00000242735 ENSG00000233869 ENSG00000214484 ENSG00000244722
#> "RPSAP26" "RPSAP27" "RPSAP28" "RPSAP29"
#> ENSG00000242952 ENSG00000234371 ENSG00000238075 ENSG00000226765
#> "RPSAP3" "RPSAP31" "RPSAP32" "RPSAP33"
#> ENSG00000239939 ENSG00000237684 ENSG00000243175 ENSG00000241888
#> "RPSAP34" "RPSAP35" "RPSAP36" "RPSAP37"
#> ENSG00000239694 ENSG00000244002 ENSG00000239269 ENSG00000231368
#> "RPSAP38" "RPSAP39" "RPSAP4" "RPSAP40"
#> ENSG00000239626 ENSG00000219463 ENSG00000216471 ENSG00000220773
#> "RPSAP41" "RPSAP42" "RPSAP43" "RPSAP44"
#> ENSG00000219773 ENSG00000213394 ENSG00000188856 ENSG00000240590
#> "RPSAP45" "RPSAP46" "RPSAP47" "RPSAP48"
#> ENSG00000226327 ENSG00000243904 ENSG00000224776 ENSG00000244131
#> "RPSAP49" "RPSAP5" "RPSAP50" "RPSAP51"
#> ENSG00000241749 ENSG00000214263 ENSG00000213621 ENSG00000214896
#> "RPSAP52" "RPSAP53" "RPSAP54" "RPSAP55"
#> ENSG00000284670 ENSG00000267524 ENSG00000225178 ENSG00000233071
#> "RPSAP56" "RPSAP57" "RPSAP58" "RPSAP59"
#> ENSG00000214629 ENSG00000228965 ENSG00000214016 ENSG00000226299
#> "RPSAP6" "RPSAP60" "RPSAP61" "RPSAP62"
#> ENSG00000233260 ENSG00000227721 ENSG00000223683 ENSG00000266943
#> "RPSAP63" "RPSAP64" "RPSAP65" "RPSAP66"
#> ENSG00000266858 ENSG00000279990 ENSG00000233487 ENSG00000237032
#> "RPSAP67" "RPSAP68" "RPSAP69" "RPSAP7"
#> ENSG00000250327 ENSG00000254256 ENSG00000219361 ENSG00000274319
#> "RPSAP70" "RPSAP71" "RPSAP72" "RPSAP73"
#> ENSG00000253621 ENSG00000270954 ENSG00000235332 ENSG00000230592
#> "RPSAP74" "RPSAP75" "RPSAP76" "RPSAP8"
#> ENSG00000234618
#> "RPSAP9"
#>
#> $Hs$TCR
#> ENSG00000102871 ENSG00000211888 ENSG00000211879 ENSG00000211878 ENSG00000211877
#> "TRADD" "TRAJ1" "TRAJ10" "TRAJ11" "TRAJ12"
#> ENSG00000211876 ENSG00000211875 ENSG00000211873 ENSG00000211872 ENSG00000211871
#> "TRAJ13" "TRAJ14" "TRAJ16" "TRAJ17" "TRAJ18"
#> ENSG00000211870 ENSG00000211887 ENSG00000211869 ENSG00000211868 ENSG00000211867
#> "TRAJ19" "TRAJ2" "TRAJ20" "TRAJ21" "TRAJ22"
#> ENSG00000211866 ENSG00000211865 ENSG00000211864 ENSG00000211863 ENSG00000211862
#> "TRAJ23" "TRAJ24" "TRAJ25" "TRAJ26" "TRAJ27"
#> ENSG00000211861 ENSG00000211860 ENSG00000211886 ENSG00000211859 ENSG00000211858
#> "TRAJ28" "TRAJ29" "TRAJ3" "TRAJ30" "TRAJ31"
#> ENSG00000211857 ENSG00000211856 ENSG00000211855 ENSG00000211854 ENSG00000276699
#> "TRAJ32" "TRAJ33" "TRAJ34" "TRAJ35" "TRAJ36"
#> ENSG00000278661 ENSG00000211851 ENSG00000211850 ENSG00000211885 ENSG00000211849
#> "TRAJ37" "TRAJ38" "TRAJ39" "TRAJ4" "TRAJ40"
#> ENSG00000211848 ENSG00000211847 ENSG00000211846 ENSG00000211845 ENSG00000211844
#> "TRAJ41" "TRAJ42" "TRAJ43" "TRAJ44" "TRAJ45"
#> ENSG00000211843 ENSG00000211842 ENSG00000211841 ENSG00000211840 ENSG00000211884
#> "TRAJ46" "TRAJ47" "TRAJ48" "TRAJ49" "TRAJ5"
#> ENSG00000211839 ENSG00000248366 ENSG00000211838 ENSG00000211837 ENSG00000211836
#> "TRAJ50" "TRAJ51" "TRAJ52" "TRAJ53" "TRAJ54"
#> ENSG00000250688 ENSG00000211835 ENSG00000211834 ENSG00000211833 ENSG00000211832
#> "TRAJ55" "TRAJ56" "TRAJ57" "TRAJ58" "TRAJ59"
#> ENSG00000211883 ENSG00000249446 ENSG00000211831 ENSG00000211882 ENSG00000211881
#> "TRAJ6" "TRAJ60" "TRAJ61" "TRAJ7" "TRAJ8"
#> ENSG00000211880 ENSG00000255569 ENSG00000256553 ENSG00000211784 ENSG00000256474
#> "TRAJ9" "TRAV1-1" "TRAV1-2" "TRAV10" "TRAV11"
#> ENSG00000211785 ENSG00000211789 ENSG00000211794 ENSG00000211788 ENSG00000211791
#> "TRAV12-1" "TRAV12-2" "TRAV12-3" "TRAV13-1" "TRAV13-2"
#> ENSG00000211792 ENSG00000258482 ENSG00000211796 ENSG00000211797 ENSG00000211798
#> "TRAV14DV4" "TRAV15" "TRAV16" "TRAV17" "TRAV18"
#> ENSG00000211799 ENSG00000211776 ENSG00000211800 ENSG00000211801 ENSG00000211802
#> "TRAV19" "TRAV2" "TRAV20" "TRAV21" "TRAV22"
#> ENSG00000211803 ENSG00000211805 ENSG00000211806 ENSG00000211807 ENSG00000211812
#> "TRAV23DV6" "TRAV24" "TRAV25" "TRAV26-1" "TRAV26-2"
#> ENSG00000211809 ENSG00000258835 ENSG00000211810 ENSG00000211777 ENSG00000259092
#> "TRAV27" "TRAV28" "TRAV29DV5" "TRAV3" "TRAV30"
#> ENSG00000249048 ENSG00000258905 ENSG00000258812 ENSG00000211813 ENSG00000211814
#> "TRAV31" "TRAV32" "TRAV33" "TRAV34" "TRAV35"
#> ENSG00000211815 ENSG00000259068 ENSG00000211816 ENSG00000211817 ENSG00000211818
#> "TRAV36DV7" "TRAV37" "TRAV38-1" "TRAV38-2DV8" "TRAV39"
#> ENSG00000211778 ENSG00000211819 ENSG00000211820 ENSG00000211779 ENSG00000211780
#> "TRAV4" "TRAV40" "TRAV41" "TRAV5" "TRAV6"
#> ENSG00000211781 ENSG00000211782 ENSG00000211786 ENSG00000211787 ENSG00000211790
#> "TRAV7" "TRAV8-1" "TRAV8-2" "TRAV8-3" "TRAV8-4"
#> ENSG00000256379 ENSG00000211795 ENSG00000211808 ENSG00000211783 ENSG00000211793
#> "TRAV8-5" "TRAV8-6" "TRAV8-7" "TRAV9-1" "TRAV9-2"
#> ENSG00000282253 ENSG00000282078 ENSG00000281989 ENSG00000282500 ENSG00000282273
#> "TRBD1" "TRBJ1-1" "TRBJ1-2" "TRBJ1-3" "TRBJ1-4"
#> ENSG00000282215 ENSG00000281957 ENSG00000282488 ENSG00000282272 ENSG00000282589
#> "TRBJ1-5" "TRBJ1-6" "TRBJ2-1" "TRBJ2-2" "TRBJ2-2P"
#> ENSG00000282371 ENSG00000282380 ENSG00000282820 ENSG00000282154 ENSG00000282392
#> "TRBJ2-3" "TRBJ2-4" "TRBJ2-5" "TRBJ2-6" "TRBJ2-7"
#> ENSG00000282423 ENSG00000282618 ENSG00000282007 ENSG00000282340 ENSG00000282711
#> "TRBV1" "TRBV10-1" "TRBV10-2" "TRBV10-3" "TRBV11-1"
#> ENSG00000282436 ENSG00000282242 ENSG00000282760 ENSG00000282326 ENSG00000282208
#> "TRBV11-2" "TRBV11-3" "TRBV12-1" "TRBV12-2" "TRBV12-3"
#> ENSG00000282354 ENSG00000282605 ENSG00000282407 ENSG00000282252 ENSG00000282497
#> "TRBV12-4" "TRBV12-5" "TRBV13" "TRBV14" "TRBV15"
#> ENSG00000282415 ENSG00000282483 ENSG00000282771 ENSG00000282621 ENSG00000282568
#> "TRBV16" "TRBV17" "TRBV18" "TRBV19" "TRBV2"
#> ENSG00000282064 ENSG00000205274 ENSG00000282462 ENSG00000183938 ENSG00000282036
#> "TRBV20-1" "TRBV20OR9-2" "TRBV21-1" "TRBV21OR9-2" "TRBV22-1"
#> ENSG00000234122 ENSG00000282449 ENSG00000229063 ENSG00000282730 ENSG00000215206
#> "TRBV22OR9-2" "TRBV23-1" "TRBV23OR9-2" "TRBV24-1" "TRBV24OR9-2"
#> ENSG00000281963 ENSG00000240215 ENSG00000281968 ENSG00000231165 ENSG00000282234
#> "TRBV25-1" "TRBV25OR9-2" "TRBV26" "TRBV26OR9-2" "TRBV27"
#> ENSG00000282812 ENSG00000282628 ENSG00000223394 ENSG00000282624 ENSG00000282297
#> "TRBV28" "TRBV29-1" "TRBV29OR9-2" "TRBV3-1" "TRBV30"
#> ENSG00000282014 ENSG00000282285 ENSG00000282803 ENSG00000282236 ENSG00000282148
#> "TRBV4-1" "TRBV4-2" "TRBV5-1" "TRBV5-2" "TRBV5-3"
#> ENSG00000282466 ENSG00000282577 ENSG00000282098 ENSG00000282748 ENSG00000281970
#> "TRBV5-4" "TRBV5-5" "TRBV5-6" "TRBV5-7" "TRBV6-1"
#> ENSG00000282719 ENSG00000282240 ENSG00000277110 ENSG00000282459 ENSG00000282470
#> "TRBV6-2" "TRBV6-4" "TRBV6-5" "TRBV6-6" "TRBV6-7"
#> ENSG00000282134 ENSG00000282225 ENSG00000282506 ENSG00000282203 ENSG00000282756
#> "TRBV6-8" "TRBV7-1" "TRBV7-2" "TRBV7-3" "TRBV7-4"
#> ENSG00000282709 ENSG00000282704 ENSG00000282179 ENSG00000281943 ENSG00000281952
#> "TRBV7-5" "TRBV7-6" "TRBV7-7" "TRBV7-9" "TRBV8-1"
#> ENSG00000282529 ENSG00000282204 ENSG00000281972 ENSG00000282047 ENSG00000223997
#> "TRBV8-2" "TRBV9" "TRBVA" "TRBVB" "TRDD1"
#> ENSG00000237235 ENSG00000228985 ENSG00000211825 ENSG00000211827 ENSG00000211828
#> "TRDD2" "TRDD3" "TRDJ1" "TRDJ2" "TRDJ3"
#> ENSG00000211826 ENSG00000211804 ENSG00000211821 ENSG00000256590 ENSG00000211690
#> "TRDJ4" "TRDV1" "TRDV2" "TRDV3" "TRGJ1"
#> ENSG00000211687 ENSG00000211691 ENSG00000211692 ENSG00000211688 ENSG00000211701
#> "TRGJ2" "TRGJP" "TRGJP1" "TRGJP2" "TRGV1"
#> ENSG00000211694 ENSG00000211693 ENSG00000233306 ENSG00000211699 ENSG00000211698
#> "TRGV10" "TRGV11" "TRGV2" "TRGV3" "TRGV4"
#> ENSG00000211697 ENSG00000228668 ENSG00000226212 ENSG00000249978 ENSG00000211696
#> "TRGV5" "TRGV5P" "TRGV6" "TRGV7" "TRGV8"
#> ENSG00000211695 ENSG00000225992 ENSG00000231202
#> "TRGV9" "TRGVA" "TRGVB"Custom Blacklist
# Add custom genes to blacklist
my_blacklist <- c(
genes.blacklist.default$Mito,
genes.blacklist.default$cellCycle,
c("CUSTOM_GENE1", "CUSTOM_GENE2")
)
result <- scGate(
data = seurat_obj,
model = my_model,
genes.blacklist = my_blacklist
)
# Or disable blacklisting entirely
result <- scGate(
data = seurat_obj,
model = my_model,
genes.blacklist = NULL
)Troubleshooting
Common Issues
| Problem | Possible_Cause | Solution |
|---|---|---|
| All cells classified as Impure | Threshold too high or wrong markers | Lower pos.thr, check marker expression |
| Too many cells classified as Pure | Threshold too low | Increase pos.thr or add negative markers |
| Slow performance | Large dataset with many models | Use ncores > 1, pre-computed reduction |
| Memory issues | Too many cells or features | Subset data, reduce maxRank |
Diagnostic Checks
# Check marker expression
data(query.seurat)
# Verify markers are present
markers <- c("CD3D", "CD3E", "MS4A1")
present <- markers %in% rownames(query.seurat)
data.frame(Marker = markers, Present = present)
#> Marker Present
#> 1 CD3D TRUE
#> 2 CD3E TRUE
#> 3 MS4A1 TRUEBest Practices Summary
- Start simple: Begin with single markers, add complexity as needed
- Validate markers: Ensure markers are expressed in your data
- Use negative markers: Improve specificity with exclusion criteria
-
Save levels: Enable
save.levels = TRUEfor debugging - Tune thresholds: Adjust based on your specific dataset
- Leverage parallelization: Use multiple cores for large datasets
- Document models: Keep records of your gating strategies
Session Info
sessionInfo()
#> R version 4.4.0 (2024-04-24)
#> Platform: aarch64-apple-darwin20
#> Running under: macOS 15.6.1
#>
#> Matrix products: default
#> BLAS: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
#>
#> locale:
#> [1] C
#>
#> time zone: Asia/Shanghai
#> tzcode source: internal
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] patchwork_1.3.2 ggplot2_4.0.1 SeuratObject_4.1.4 Seurat_4.4.0
#> [5] scGate_1.7.2
#>
#> loaded via a namespace (and not attached):
#> [1] deldir_2.0-4 pbapply_1.7-4 gridExtra_2.3
#> [4] rlang_1.1.7 magrittr_2.0.4 RcppAnnoy_0.0.23
#> [7] otel_0.2.0 spatstat.geom_3.7-0 matrixStats_1.5.0
#> [10] ggridges_0.5.7 compiler_4.4.0 png_0.1-8
#> [13] systemfonts_1.3.1 vctrs_0.7.1 reshape2_1.4.5
#> [16] stringr_1.6.0 pkgconfig_2.0.3 fastmap_1.2.0
#> [19] promises_1.5.0 rmarkdown_2.30 ragg_1.5.0
#> [22] purrr_1.2.1 xfun_0.56 cachem_1.1.0
#> [25] jsonlite_2.0.0 goftest_1.2-3 later_1.4.5
#> [28] BiocParallel_1.40.2 spatstat.utils_3.2-1 irlba_2.3.5.1
#> [31] parallel_4.4.0 cluster_2.1.8.1 R6_2.6.1
#> [34] ica_1.0-3 spatstat.data_3.1-9 stringi_1.8.7
#> [37] bslib_0.9.0 RColorBrewer_1.1-3 reticulate_1.44.1
#> [40] spatstat.univar_3.1-6 parallelly_1.46.1 lmtest_0.9-40
#> [43] jquerylib_0.1.4 scattermore_1.2 Rcpp_1.1.1
#> [46] knitr_1.51 tensor_1.5.1 future.apply_1.20.1
#> [49] zoo_1.8-15 sctransform_0.4.3 httpuv_1.6.16
#> [52] Matrix_1.7-4 splines_4.4.0 igraph_2.2.1
#> [55] tidyselect_1.2.1 abind_1.4-8 dichromat_2.0-0.1
#> [58] yaml_2.3.12 spatstat.random_3.4-4 spatstat.explore_3.7-0
#> [61] codetools_0.2-20 miniUI_0.1.2 listenv_0.10.0
#> [64] plyr_1.8.9 lattice_0.22-7 tibble_3.3.1
#> [67] withr_3.0.2 shiny_1.12.1 S7_0.2.1
#> [70] ROCR_1.0-12 evaluate_1.0.5 Rtsne_0.17
#> [73] future_1.69.0 desc_1.4.3 survival_3.8-3
#> [76] polyclip_1.10-7 fitdistrplus_1.2-5 pillar_1.11.1
#> [79] KernSmooth_2.23-26 plotly_4.11.0 generics_0.1.4
#> [82] sp_2.2-0 scales_1.4.0 globals_0.18.0
#> [85] xtable_1.8-4 glue_1.8.0 lazyeval_0.2.2
#> [88] tools_4.4.0 BiocNeighbors_2.0.1 data.table_1.18.0
#> [91] RANN_2.6.2 dotCall64_1.2 fs_1.6.6
#> [94] leiden_0.4.3.1 cowplot_1.2.0 grid_4.4.0
#> [97] tidyr_1.3.2 colorspace_2.1-2 nlme_3.1-168
#> [100] cli_3.6.5 spatstat.sparse_3.1-0 textshaping_1.0.4
#> [103] spam_2.11-3 viridisLite_0.4.2 dplyr_1.1.4
#> [106] uwot_0.2.4 gtable_0.3.6 sass_0.4.10
#> [109] digest_0.6.39 progressr_0.18.0 ggrepel_0.9.6
#> [112] htmlwidgets_1.6.4 farver_2.1.2 htmltools_0.5.9
#> [115] pkgdown_2.1.3 lifecycle_1.0.5 httr_1.4.7
#> [118] mime_0.13 MASS_7.3-65