Smooth UCell scores by kNN (V4/V5 compatible)
Usage
.SmoothKNN(
obj,
signature.names = NULL,
reduction = "pca",
k = 10,
decay = 0.1,
up.only = FALSE,
suffix = NULL
)
Arguments
- obj
Seurat object
- signature.names
Signatures to smooth
- reduction
Reduction to use
- k
Number of neighbors
- decay
Decay parameter
- up.only
Only allow increases
- suffix
Suffix for smoothed columns
Value
Seurat object with smoothed scores