Group cells based on similarity of their communication patterns using
graph embedding.
Usage
group_cell_communication(
seurat_obj,
database_name,
key = "total",
n_groups = NULL,
method = c("spectral"),
n_neighbors = 10L,
verbose = TRUE
)
Arguments
- seurat_obj
Seurat object with COMMOTR results.
- database_name
Database name.
- key
LR pair or pathway name (default: "total").
- n_groups
Number of groups.
- method
Embedding method: "spectral" (default).
- n_neighbors
Number of neighbors for graph construction.
- verbose
Print progress.
Value
Seurat object with group assignments added to metadata.