Group communication direction patterns — group_communication_direction • COMMOTR

Cluster cells based on similarity of their communication direction vectors.

Usage

group_communication_direction(
  seurat_obj,
  database_name,
  key = "total",
  field = c("both", "sender", "receiver"),
  n_clusters = NULL,
  method = c("kmeans", "hierarchical"),
  verbose = TRUE
)

Arguments

seurat_obj: Seurat object with vector field results.
database_name: Database name.
key: LR pair or pathway name (default: "total").
field: "sender", "receiver", or "both" (default).
n_clusters: Number of clusters (default: auto).
method: Clustering method: "kmeans" (default), "hierarchical".
verbose: Print progress messages.

Value

Seurat object with cluster assignments in metadata.