Create a chord diagram showing cluster-cluster communication.
Usage
plot_chord_diagram(
seurat_obj,
database_name,
clustering,
key = "total",
p_threshold = 0.05,
min_weight = NULL,
colors = NULL,
...
)Arguments
- seurat_obj
Seurat object with cluster communication results.
- database_name
Database name.
- clustering
Clustering name.
- key
LR pair or pathway name.
- p_threshold
P-value threshold.
- min_weight
Minimum weight to show.
- colors
Named vector of colors for clusters.
- ...
Additional arguments passed to circlize functions.