Plot communication heatmap — plot_communication_heatmap • COMMOTR

Create a heatmap of cluster-cluster communication.

Usage

plot_communication_heatmap(
  seurat_obj,
  database_name,
  clustering,
  key = "total",
  show_pvalue = TRUE,
  color_palette = NULL,
  title = NULL
)

Arguments

seurat_obj: Seurat object.
database_name: Database name.
clustering: Clustering name.
key: LR pair or pathway name.
show_pvalue: Show significance stars.
color_palette: Color palette for heatmap.
title: Plot title.

Value

A ggplot2 object.