Performs statistical significance testing for cluster separability using
the SigClust method on all pairwise combinations of clusters.
Usage
CalcSigClust(seu, clusters, nsim = 100, nfeatures = 2000, cores = 1)
Arguments
- seu
A Seurat object
- clusters
Vector of cluster assignments
- nsim
Number of simulations for SigClust. Default is 100
- nfeatures
Number of variable features. Default is 2000
- cores
Number of cores for parallel processing. Default is 1
Value
A symmetric matrix of p-values from pairwise SigClust tests.
Diagonal elements are NA. P-values indicate significance of cluster separation.