Performs Seurat clustering and retrieves cluster assignments for the
specified optimal K values.
Usage
getClusters(seu, optK, nPC = 30, k.param = 20, nfeatures = 2000)
Arguments
- seu
A Seurat object
- optK
Vector of target cluster numbers
- nPC
Number of principal components. Default is 30
- k.param
Number of nearest neighbors. Default is 20
- nfeatures
Number of variable features. Default is 2000
Value
A list containing:
- clusters
Matrix of cluster assignments (cells x K values)
- resolution
Resolution parameters used for each K