Converts gene column in iTALK-formatted data frames (from rawParse or DEG).
Internal helper function used by FindLR.
Usage
convert_data_species(
data,
from_species,
to_species = "Homo_sapiens",
ensembl_version = 103,
mirror = NULL,
cache = TRUE,
max_tries = 5
)
Arguments
- data
Data frame with 'gene' column
- from_species
Source species
- to_species
Target species (default: "Homo_sapiens")
- ensembl_version
Ensembl version
- mirror
Ensembl mirror
- cache
Use caching
- max_tries
Maximum retry attempts
Value
Data frame with converted gene names. Unmapped genes are removed.