Aggregate Communication by Pathway

Aggregate metabolite-mediated communication at the pathway level. Due to the large number of pathway associations, this function uses a simplified approach focusing on top pathways.

aggregateByPathway(object, top_pathways = 50, min_metabolites = 3)

Arguments

object

A scMetaLink object with significant interactions

top_pathways

Integer. Number of top pathways to analyze (default: 50)

min_metabolites

Integer. Minimum metabolites per pathway (default: 3)

Value

Updated scMetaLink object with pathway_aggregated slot filled