Check Lactate Gene Availability

Checks which lactate signaling genes are available in the expression data. Useful for quality control before running analysis.

checkLactateGenes(object)

Arguments

object

scMetaLink object

Value

data.frame showing gene availability by category

Examples

# \donttest{
data(crc_example)
obj <- createScMetaLink(crc_expr, crc_meta, "cell_type")
#> Created scMetaLink object with 4210 genes, 2850 cells, 15 cell types
checkLactateGenes(obj)
#> Lactate Gene Availability Summary:
#> ==================================
#>          category    available
#>       degradation   2/2 (100%)
#>    direct_sensing   1/1 (100%)
#>  indirect_sensing   4/4 (100%)
#>        production 10/10 (100%)
#>            uptake   3/3 (100%)
#> 
# }