Compare Two Conditions

Compare metabolite-mediated communication between two conditions

compareCommunication(
  object1,
  object2,
  condition_names = c("Condition1", "Condition2"),
  method = "log2fc"
)

Arguments

object1

scMetaLink object for condition 1

object2

scMetaLink object for condition 2

condition_names

Character vector of length 2 for condition names

method

Character. Comparison method: "difference", "ratio", or "log2fc"

Value

data.frame with differential communication results

Examples

if (FALSE) { # \dontrun{
# Compare tumor vs normal (requires two scMetaLink objects)
diff <- compareCommunication(tumor_obj, normal_obj,
  condition_names = c("Tumor", "Normal")
)
} # }