Initialize a scMetaLink object from a Seurat object
createScMetaLinkFromSeurat(
seurat_obj,
cell_type_column = "cell_type",
assay = "RNA",
slot = "data",
min_cells = 10
)
Arguments
- seurat_obj
A Seurat object
- cell_type_column
Character. Column name in meta.data for cell type
- assay
Character. Assay to use (default: "RNA")
- slot
Character. Slot to use (default: "data" for normalized data)
- min_cells
Integer. Minimum cells per cell type
Value
A scMetaLink object