Plot Communication Heatmap — plotCommunicationHeatmap • scMetaLink

Create a heatmap of cell-cell communication

plotCommunicationHeatmap(
  object,
  metabolite = NULL,
  cluster_rows = TRUE,
  cluster_cols = TRUE,
  show_values = FALSE,
  colors = NULL,
  title = NULL
)

Arguments

object: scMetaLink object
metabolite: Character. Specific metabolite to show (NULL for aggregated)
cluster_rows: Logical. Cluster rows
cluster_cols: Logical. Cluster columns
show_values: Logical. Show values in cells
colors: Character vector. Color palette
title: Character. Plot title

Value

A ComplexHeatmap object

Examples

# \donttest{
# Plot aggregated communication heatmap
plotCommunicationHeatmap(obj)
#> Error: object 'obj' not found

# Plot specific metabolite
plotCommunicationHeatmap(obj, metabolite = "HMDB0000148")
#> Error: object 'obj' not found
# }