Plot Communication Network

Create a network visualization of cell-cell communication

plotCommunicationNetwork(
  object,
  metabolite = NULL,
  min_score = 0,
  layout = "fr",
  node_size_by = "degree",
  edge_width_scale = 2,
  colors = NULL
)

Arguments

object

scMetaLink object

metabolite

Character. Specific metabolite (NULL for aggregated)

min_score

Numeric. Minimum score threshold

layout

Character. Network layout algorithm

node_size_by

Character. Size nodes by "degree" or "centrality"

edge_width_scale

Numeric. Scale factor for edge widths

colors

Named vector. Colors for cell types

Value

A ggplot object