Convenience function to run analysis from Seurat object
runScMetaLinkSeurat(
seurat_obj,
cell_type_column = "cell_type",
assay = "RNA",
slot = "data",
...
)
Arguments
- seurat_obj
A Seurat object
- cell_type_column
Character. Column in meta.data for cell type
- assay
Character. Assay to use
- slot
Character. Slot to use ("data" or "counts")
- ...
Additional arguments passed to runScMetaLink
Value
A scMetaLink object