Package index • Connectome

Network Construction

Functions for building cell-cell communication networks

CreateConnectome(): CreateConnectome

FilterConnectome(): FilterConnectome

SingleCellConnectome(): SingleCellConnectome

Differential Analysis

Functions for comparing networks between conditions

DifferentialConnectome(): DifferentialConnectome

EvenSplit(): EvenSplit

Network Visualization

Functions for visualizing connectivity patterns

NetworkPlot(): NetworkPlot

CircosPlot(): CircosPlot

CircosDiff(): CircosDiff

EdgeDotPlot(): EdgeDotPlot

DiffEdgeDotPlot(): DiffEdgeDotPlot

Centrality Analysis

Functions for network centrality analysis

Centrality(): Centrality

CompareCentrality(): CompareCentrality

ModalDotPlot(): ModalDotPlot

Scatter Plots

Functions for exploring specific interactions

SignalScatter(): SignalScatter

CellCellScatter(): CellCellScatter

DifferentialScoringPlot(): DifferentialScoringPlot

Data

Built-in ligand-receptor databases

ncomms8866_human: FANTOM5 Ligand-Receptor Database (Human)

ncomms8866_mouse: FANTOM5 Ligand-Receptor Database (Mouse)

ncomms8866_rat: FANTOM5 Ligand-Receptor Database (Rat)

ncomms8866_pig: FANTOM5 Ligand-Receptor Database (Pig)

ncomms8866: FANTOM5 Ligand-Receptor Database (Original)

translator: Gene Symbol Translator