Skip to contents

Drug sensitivity data (IC50 and AUC) for cancer cell lines from the Genomics of Drug Sensitivity in Cancer (GDSC) project.

Usage

gdscdata

Format

A data frame with 196,344 observations and 19 variables including:

DRUG_ID

GDSC drug identifier

DRUG_NAME

Drug name

CELL_LINE_NAME

Cell line identifier

COSMIC_ID

COSMIC cell line ID

SANGER_MODEL_ID

Sanger model ID

TCGA_DESC

TCGA cancer type classification

DATASET

Dataset source

COMPANY_ID

Company identifier

NLME_RESULT_ID

NLME result ID

NLME_CURVE_ID

NLME curve ID

LN_IC50

Natural log of IC50

AUC

Area under the dose-response curve

RMSE

Root mean square error

Z_SCORE

Z-score

MAX_CONC

Maximum concentration tested

MIN_CONC

Minimum concentration tested

PUTATIVE_TARGET

Known drug target

PATHWAY_NAME

Target pathway

WEBRELEASE

Web release version

References

Yang W, et al. (2013). Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells. Nucleic Acids Research 41, D955-D961.