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Core Functions

Main analysis functions

scPharmIdentify()
Identify Pharmacological Cell Subpopulations
scPharmDr()
Compute Drug Prioritization Score (Dr)
scPharmDse()
Predict Drug Side Effects (Dse)
scPharmCombo()
Identify Potential Drug Combinations
scPharmGenNullDist()
Generate Null Distribution and Thresholds

Datasets

Built-in reference data

bulkdata
Bulk RNA-seq Expression Data for Cancer Cell Lines
gdscdata
GDSC2 Pharmacogenomics Data
drug_info
GDSC2 Drug Information
copykat_full.anno.hg20
Human Gene Annotations for hg38
copykat_DNA.hg20
Genomic Bin Coordinates for hg38
copykat_cyclegenes
Cell Cycle Genes for CNV Analysis