Fits GRNs per cluster and returns a Links object containing
regulatory networks for each cluster.
Usage
get_links(
oracle,
cluster_name_for_GRN_unit = NULL,
alpha = 10,
bagging_number = 20,
verbose_level = 1,
n_jobs = -1
)
Arguments
- oracle
Oracle object
- cluster_name_for_GRN_unit
Column name for clustering
- alpha
Regularization strength
- bagging_number
Number of bagging iterations
- verbose_level
Verbosity (0=silent, 1=progress, 2=detailed)
- n_jobs
Number of parallel jobs